Hb_114025_010

Information

Type -
Description -
Location Contig114025: 188-549
Sequence    

Annotation

kegg
ID pop:POPTR_0008s13520g
description POPTRDRAFT_564678; hypothetical protein
nr
ID XP_002311535.2
description hypothetical protein POPTR_0008s13520g [Populus trichocarpa]
swissprot
ID Q9LQV2
description RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana GN=RDR1 PE=2 SV=1
trembl
ID B9HJH5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s13520g PE=4 SV=2
Gene Ontology
ID GO:0000166
description probable rna-dependent rna polymerase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_114025_010 0.0 - - hypothetical protein POPTR_0008s13520g [Populus trichocarpa]
2 Hb_008080_050 0.0605371725 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_001856_060 0.1102400042 - - serine/threonine protein kinase, putative [Ricinus communis]
4 Hb_001675_230 0.1107228552 - - scab resistance family protein [Populus trichocarpa]
5 Hb_006120_020 0.1281962754 - - -
6 Hb_002435_080 0.1399569531 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000291_320 0.1405602715 - - Protein MLO, putative [Ricinus communis]
8 Hb_000149_120 0.1532521276 - - PREDICTED: uncharacterized protein LOC105642119 isoform X2 [Jatropha curcas]
9 Hb_002542_090 0.156488354 - - Potassium transporter, putative [Ricinus communis]
10 Hb_002928_220 0.1595005994 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
11 Hb_000411_060 0.1635462068 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
12 Hb_024570_020 0.1713476192 transcription factor TF Family: MYB-related PREDICTED: transcription factor RAX2-like [Populus euphratica]
13 Hb_001013_040 0.1718156007 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 51 [Jatropha curcas]
14 Hb_009486_100 0.1726543717 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_124385_010 0.1770136925 - - hypothetical protein JCGZ_13882 [Jatropha curcas]
16 Hb_000575_110 0.1798316965 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
17 Hb_011282_070 0.1828639405 - - ATP binding protein, putative [Ricinus communis]
18 Hb_001369_320 0.1835698936 - - PREDICTED: dynein light chain, cytoplasmic-like [Jatropha curcas]
19 Hb_021419_060 0.1838495534 - - LRR receptor-like serine/threonine-protein kinase, putative [Theobroma cacao]
20 Hb_006938_010 0.1878513831 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]

Gene co-expression network

sample Hb_114025_010 Hb_114025_010 Hb_008080_050 Hb_008080_050 Hb_114025_010--Hb_008080_050 Hb_001856_060 Hb_001856_060 Hb_114025_010--Hb_001856_060 Hb_001675_230 Hb_001675_230 Hb_114025_010--Hb_001675_230 Hb_006120_020 Hb_006120_020 Hb_114025_010--Hb_006120_020 Hb_002435_080 Hb_002435_080 Hb_114025_010--Hb_002435_080 Hb_000291_320 Hb_000291_320 Hb_114025_010--Hb_000291_320 Hb_008080_050--Hb_001856_060 Hb_008080_050--Hb_001675_230 Hb_000411_060 Hb_000411_060 Hb_008080_050--Hb_000411_060 Hb_002542_090 Hb_002542_090 Hb_008080_050--Hb_002542_090 Hb_001013_040 Hb_001013_040 Hb_008080_050--Hb_001013_040 Hb_001856_060--Hb_001013_040 Hb_001856_060--Hb_002435_080 Hb_001331_040 Hb_001331_040 Hb_001856_060--Hb_001331_040 Hb_001856_060--Hb_000411_060 Hb_001675_230--Hb_006120_020 Hb_011282_070 Hb_011282_070 Hb_001675_230--Hb_011282_070 Hb_000422_020 Hb_000422_020 Hb_001675_230--Hb_000422_020 Hb_000575_110 Hb_000575_110 Hb_001675_230--Hb_000575_110 Hb_000149_120 Hb_000149_120 Hb_006120_020--Hb_000149_120 Hb_002928_220 Hb_002928_220 Hb_006120_020--Hb_002928_220 Hb_005618_110 Hb_005618_110 Hb_006120_020--Hb_005618_110 Hb_006970_100 Hb_006970_100 Hb_006120_020--Hb_006970_100 Hb_020902_020 Hb_020902_020 Hb_002435_080--Hb_020902_020 Hb_002435_080--Hb_008080_050 Hb_002435_080--Hb_001013_040 Hb_099198_010 Hb_099198_010 Hb_002435_080--Hb_099198_010 Hb_000291_320--Hb_008080_050 Hb_000291_320--Hb_001856_060 Hb_000291_320--Hb_006120_020 Hb_000291_320--Hb_000149_120 Hb_000291_320--Hb_002542_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.821218 0.449817 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 3.79252 0.62788

CAGE analysis