Hb_114310_030

Information

Type -
Description -
Location Contig114310: 16070-18440
Sequence    

Annotation

kegg
ID rcu:RCOM_1596070
description peptide transporter, putative
nr
ID BAJ53174.1
description JHL18I08.8 [Jatropha curcas]
swissprot
ID Q9M390
description Protein NRT1/ PTR FAMILY 8.1 OS=Arabidopsis thaliana GN=NPF8.1 PE=1 SV=1
trembl
ID E6NU64
description JHL18I08.8 protein OS=Jatropha curcas GN=JHL18I08.8 PE=3 SV=1
Gene Ontology
ID GO:0016021
description protein nrt1 ptr family -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04366: 17874-17996
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_114310_030 0.0 - - JHL18I08.8 [Jatropha curcas]
2 Hb_000087_160 0.1149524233 - - ABC transporter family protein [Hevea brasiliensis]
3 Hb_004807_070 0.115811456 - - hypothetical protein POPTR_0004s17330g, partial [Populus trichocarpa]
4 Hb_006018_020 0.1159222272 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001712_010 0.1169139529 - - PREDICTED: phosphate transporter PHO1 homolog 1 [Jatropha curcas]
6 Hb_011344_110 0.1179001908 transcription factor TF Family: MYB PREDICTED: protein ODORANT1 [Jatropha curcas]
7 Hb_001141_430 0.1179487047 - - hypothetical protein POPTR_0008s15160g [Populus trichocarpa]
8 Hb_000628_070 0.1183102127 - - -
9 Hb_001401_110 0.1234010303 - - hypothetical protein JCGZ_04272 [Jatropha curcas]
10 Hb_001232_170 0.123899008 - - sulfate transporter, putative [Ricinus communis]
11 Hb_092272_010 0.1244113445 - - -
12 Hb_000754_010 0.1254927836 - - unnamed protein product [Vitis vinifera]
13 Hb_001269_430 0.1311866665 - - hypothetical protein JCGZ_04286 [Jatropha curcas]
14 Hb_000244_290 0.1322254099 - - PREDICTED: UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 [Jatropha curcas]
15 Hb_000816_090 0.1343501125 transcription factor TF Family: TRAF protein binding protein, putative [Ricinus communis]
16 Hb_001343_060 0.1345619712 - - Cytochrome P450 [Theobroma cacao]
17 Hb_000920_120 0.1349825659 - - -
18 Hb_000438_180 0.1354499346 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
19 Hb_025557_090 0.136960144 - - hypothetical protein glysoja_034865 [Glycine soja]
20 Hb_001123_080 0.1375826548 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_114310_030 Hb_114310_030 Hb_000087_160 Hb_000087_160 Hb_114310_030--Hb_000087_160 Hb_004807_070 Hb_004807_070 Hb_114310_030--Hb_004807_070 Hb_006018_020 Hb_006018_020 Hb_114310_030--Hb_006018_020 Hb_001712_010 Hb_001712_010 Hb_114310_030--Hb_001712_010 Hb_011344_110 Hb_011344_110 Hb_114310_030--Hb_011344_110 Hb_001141_430 Hb_001141_430 Hb_114310_030--Hb_001141_430 Hb_000959_170 Hb_000959_170 Hb_000087_160--Hb_000959_170 Hb_159791_010 Hb_159791_010 Hb_000087_160--Hb_159791_010 Hb_011930_090 Hb_011930_090 Hb_000087_160--Hb_011930_090 Hb_187906_010 Hb_187906_010 Hb_000087_160--Hb_187906_010 Hb_019299_010 Hb_019299_010 Hb_000087_160--Hb_019299_010 Hb_000230_220 Hb_000230_220 Hb_000087_160--Hb_000230_220 Hb_001401_110 Hb_001401_110 Hb_004807_070--Hb_001401_110 Hb_001269_430 Hb_001269_430 Hb_004807_070--Hb_001269_430 Hb_000201_060 Hb_000201_060 Hb_004807_070--Hb_000201_060 Hb_000754_010 Hb_000754_010 Hb_004807_070--Hb_000754_010 Hb_004807_070--Hb_006018_020 Hb_001343_060 Hb_001343_060 Hb_004807_070--Hb_001343_060 Hb_001123_080 Hb_001123_080 Hb_006018_020--Hb_001123_080 Hb_006018_020--Hb_000754_010 Hb_001232_170 Hb_001232_170 Hb_006018_020--Hb_001232_170 Hb_014881_020 Hb_014881_020 Hb_006018_020--Hb_014881_020 Hb_000628_070 Hb_000628_070 Hb_006018_020--Hb_000628_070 Hb_006018_020--Hb_011344_110 Hb_092272_010 Hb_092272_010 Hb_001712_010--Hb_092272_010 Hb_001712_010--Hb_000628_070 Hb_001712_010--Hb_001343_060 Hb_001712_010--Hb_001141_430 Hb_001712_010--Hb_011344_110 Hb_004757_010 Hb_004757_010 Hb_001712_010--Hb_004757_010 Hb_000244_290 Hb_000244_290 Hb_011344_110--Hb_000244_290 Hb_011344_110--Hb_001343_060 Hb_011344_110--Hb_000628_070 Hb_011344_110--Hb_014881_020 Hb_011344_110--Hb_001232_170 Hb_001141_430--Hb_001343_060 Hb_001141_430--Hb_159791_010 Hb_001141_430--Hb_004757_010 Hb_001141_430--Hb_011344_110 Hb_000816_170 Hb_000816_170 Hb_001141_430--Hb_000816_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0108579 0.0269056 0.0165627 0.402124 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0409542

CAGE analysis