Hb_114310_070

Information

Type -
Description -
Location Contig114310: 30285-34945
Sequence    

Annotation

kegg
ID rcu:RCOM_1596020
description GTP-dependent nucleic acid-binding protein engD, putative
nr
ID XP_002510461.1
description GTP-dependent nucleic acid-binding protein engD, putative [Ricinus communis]
swissprot
ID Q851Q6
description Probable GTP-binding protein OBGC2 OS=Oryza sativa subsp. japonica GN=Os03g0799700 PE=2 SV=1
trembl
ID B9R818
description GTP-dependent nucleic acid-binding protein engD, putative OS=Ricinus communis GN=RCOM_1596020 PE=4 SV=1
Gene Ontology
ID GO:0000166
description probable gtp-binding protein obgc2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04370: 30312-34947 , PASA_asmbl_04372: 33268-33670
cDNA
(Sanger)
(ID:Location)		 025_I14.ab1: 32551-34943

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_114310_070 0.0 - - GTP-dependent nucleic acid-binding protein engD, putative [Ricinus communis]
2 Hb_033312_010 0.0632069752 - - PREDICTED: valine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
3 Hb_000237_200 0.075933774 - - PREDICTED: SUMO-activating enzyme subunit 2 [Jatropha curcas]
4 Hb_000748_090 0.0782819908 - - glucose inhibited division protein A, putative [Ricinus communis]
5 Hb_007012_030 0.0799049559 - - PREDICTED: transmembrane and coiled-coil domain-containing protein 4-like isoform X1 [Jatropha curcas]
6 Hb_002876_300 0.0820919357 - - PREDICTED: histidinol-phosphate aminotransferase, chloroplastic-like [Jatropha curcas]
7 Hb_002150_140 0.082420695 - - PREDICTED: girdin-like [Jatropha curcas]
8 Hb_001438_010 0.0844960311 - - PREDICTED: uncharacterized protein LOC105639111 isoform X1 [Jatropha curcas]
9 Hb_000555_020 0.0848870157 - - APO protein 2, chloroplast precursor, putative [Ricinus communis]
10 Hb_000108_020 0.0886109184 - - hypothetical protein POPTR_0019s02430g [Populus trichocarpa]
11 Hb_010174_090 0.0901123517 - - PREDICTED: ALBINO3-like protein 1, chloroplastic [Jatropha curcas]
12 Hb_001660_120 0.0913294707 - - PREDICTED: adenylate kinase, chloroplastic [Jatropha curcas]
13 Hb_000300_470 0.0921957401 - - PREDICTED: nucleolin-like [Jatropha curcas]
14 Hb_002774_190 0.0924480092 - - Endoplasmic reticulum-Golgi intermediate compartment protein, putative [Ricinus communis]
15 Hb_002600_070 0.0928582466 transcription factor TF Family: TAZ PREDICTED: histone acetyltransferase HAC12 [Jatropha curcas]
16 Hb_013405_080 0.0929190322 - - PREDICTED: proline--tRNA ligase [Jatropha curcas]
17 Hb_113347_010 0.0930739875 - - hypothetical protein CISIN_1g009336mg [Citrus sinensis]
18 Hb_026053_040 0.0931864165 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000826_030 0.0935522882 - - PREDICTED: putative tRNA pseudouridine synthase isoform X1 [Jatropha curcas]
20 Hb_000311_120 0.0952166159 - - PREDICTED: NADPH-dependent thioredoxin reductase 3 [Populus euphratica]

Gene co-expression network

sample Hb_114310_070 Hb_114310_070 Hb_033312_010 Hb_033312_010 Hb_114310_070--Hb_033312_010 Hb_000237_200 Hb_000237_200 Hb_114310_070--Hb_000237_200 Hb_000748_090 Hb_000748_090 Hb_114310_070--Hb_000748_090 Hb_007012_030 Hb_007012_030 Hb_114310_070--Hb_007012_030 Hb_002876_300 Hb_002876_300 Hb_114310_070--Hb_002876_300 Hb_002150_140 Hb_002150_140 Hb_114310_070--Hb_002150_140 Hb_013405_080 Hb_013405_080 Hb_033312_010--Hb_013405_080 Hb_001660_120 Hb_001660_120 Hb_033312_010--Hb_001660_120 Hb_134849_010 Hb_134849_010 Hb_033312_010--Hb_134849_010 Hb_002774_190 Hb_002774_190 Hb_033312_010--Hb_002774_190 Hb_000032_500 Hb_000032_500 Hb_033312_010--Hb_000032_500 Hb_021374_030 Hb_021374_030 Hb_000237_200--Hb_021374_030 Hb_000035_090 Hb_000035_090 Hb_000237_200--Hb_000035_090 Hb_000300_470 Hb_000300_470 Hb_000237_200--Hb_000300_470 Hb_000237_200--Hb_002876_300 Hb_000237_200--Hb_002774_190 Hb_000748_090--Hb_007012_030 Hb_002600_070 Hb_002600_070 Hb_000748_090--Hb_002600_070 Hb_068804_090 Hb_068804_090 Hb_000748_090--Hb_068804_090 Hb_004324_360 Hb_004324_360 Hb_000748_090--Hb_004324_360 Hb_021596_020 Hb_021596_020 Hb_000748_090--Hb_021596_020 Hb_000482_050 Hb_000482_050 Hb_000748_090--Hb_000482_050 Hb_007012_030--Hb_002600_070 Hb_007012_030--Hb_068804_090 Hb_000617_250 Hb_000617_250 Hb_007012_030--Hb_000617_250 Hb_007012_030--Hb_000482_050 Hb_007012_030--Hb_004324_360 Hb_030414_040 Hb_030414_040 Hb_002876_300--Hb_030414_040 Hb_000826_030 Hb_000826_030 Hb_002876_300--Hb_000826_030 Hb_002876_300--Hb_000035_090 Hb_005946_040 Hb_005946_040 Hb_002876_300--Hb_005946_040 Hb_113853_010 Hb_113853_010 Hb_002876_300--Hb_113853_010 Hb_012438_030 Hb_012438_030 Hb_002876_300--Hb_012438_030 Hb_000555_020 Hb_000555_020 Hb_002150_140--Hb_000555_020 Hb_005496_050 Hb_005496_050 Hb_002150_140--Hb_005496_050 Hb_087313_010 Hb_087313_010 Hb_002150_140--Hb_087313_010 Hb_001438_010 Hb_001438_010 Hb_002150_140--Hb_001438_010 Hb_021650_010 Hb_021650_010 Hb_002150_140--Hb_021650_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.34044 9.61282 19.6198 10.1979 7.27278 8.53385
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.80094 9.55311 5.16457 9.59397 24.3048

CAGE analysis