Hb_114310_080

Information

Type -
Description -
Location Contig114310: 38931-42003
Sequence    

Annotation

kegg
ID rcu:RCOM_1596010
description hypothetical protein
nr
ID XP_002510460.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID A7SWD3
description Glucose-induced degradation protein 8 homolog OS=Nematostella vectensis GN=v1g247787 PE=3 SV=1
trembl
ID B9R817
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1596010 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04373: 38673-41846
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_114310_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000985_060 0.0646353099 - - PREDICTED: protein transport protein SFT2-like isoform X1 [Jatropha curcas]
3 Hb_028515_010 0.0661230772 - - PREDICTED: protein DEFECTIVE IN MERISTEM SILENCING 3 isoform X1 [Jatropha curcas]
4 Hb_029388_030 0.0745183067 - - PREDICTED: uncharacterized protein LOC105647324 [Jatropha curcas]
5 Hb_000483_390 0.0782702433 - - PREDICTED: vesicle-associated protein 2-1 [Jatropha curcas]
6 Hb_000417_260 0.0819691411 - - protein with unknown function [Ricinus communis]
7 Hb_001461_010 0.0843305218 - - PREDICTED: trafficking protein particle complex subunit 5 [Pyrus x bretschneideri]
8 Hb_000638_170 0.0843400267 - - PREDICTED: ras-related protein RABC1 [Jatropha curcas]
9 Hb_000392_380 0.0858276728 - - ubiquitin-conjugating enzyme [Medicago truncatula]
10 Hb_004659_060 0.0880817704 - - RAS-related GTP-binding family protein [Populus trichocarpa]
11 Hb_001481_140 0.0894236096 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
12 Hb_004837_160 0.090447925 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform X1 [Jatropha curcas]
13 Hb_005568_120 0.0907484637 - - Prephenate dehydratase [Hevea brasiliensis]
14 Hb_009486_020 0.0913515338 - - nucleoside diphosphate kinase 1 [Hevea brasiliensis]
15 Hb_004672_010 0.0919092413 - - ecotropic viral integration site, putative [Ricinus communis]
16 Hb_002007_210 0.0927034691 - - PREDICTED: sucrose nonfermenting 4-like protein isoform X2 [Jatropha curcas]
17 Hb_002110_200 0.0935992629 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X1 [Jatropha curcas]
18 Hb_000254_050 0.0939650176 - - hypothetical protein VITISV_010510 [Vitis vinifera]
19 Hb_003671_020 0.0949494512 - - calcineurin B, putative [Ricinus communis]
20 Hb_001776_160 0.0957050258 - - 20S proteasome alpha subunit G1 [Theobroma cacao]

Gene co-expression network

sample Hb_114310_080 Hb_114310_080 Hb_000985_060 Hb_000985_060 Hb_114310_080--Hb_000985_060 Hb_028515_010 Hb_028515_010 Hb_114310_080--Hb_028515_010 Hb_029388_030 Hb_029388_030 Hb_114310_080--Hb_029388_030 Hb_000483_390 Hb_000483_390 Hb_114310_080--Hb_000483_390 Hb_000417_260 Hb_000417_260 Hb_114310_080--Hb_000417_260 Hb_001461_010 Hb_001461_010 Hb_114310_080--Hb_001461_010 Hb_000635_150 Hb_000635_150 Hb_000985_060--Hb_000635_150 Hb_000479_190 Hb_000479_190 Hb_000985_060--Hb_000479_190 Hb_000363_360 Hb_000363_360 Hb_000985_060--Hb_000363_360 Hb_000985_060--Hb_028515_010 Hb_000985_060--Hb_029388_030 Hb_005568_120 Hb_005568_120 Hb_028515_010--Hb_005568_120 Hb_004837_160 Hb_004837_160 Hb_028515_010--Hb_004837_160 Hb_000373_130 Hb_000373_130 Hb_028515_010--Hb_000373_130 Hb_003349_090 Hb_003349_090 Hb_028515_010--Hb_003349_090 Hb_003671_020 Hb_003671_020 Hb_029388_030--Hb_003671_020 Hb_033594_150 Hb_033594_150 Hb_029388_030--Hb_033594_150 Hb_029388_030--Hb_000479_190 Hb_152784_010 Hb_152784_010 Hb_029388_030--Hb_152784_010 Hb_003414_050 Hb_003414_050 Hb_000483_390--Hb_003414_050 Hb_000638_170 Hb_000638_170 Hb_000483_390--Hb_000638_170 Hb_011381_080 Hb_011381_080 Hb_000483_390--Hb_011381_080 Hb_000483_390--Hb_003671_020 Hb_000483_390--Hb_028515_010 Hb_005278_040 Hb_005278_040 Hb_000417_260--Hb_005278_040 Hb_001005_080 Hb_001005_080 Hb_000417_260--Hb_001005_080 Hb_000384_120 Hb_000384_120 Hb_000417_260--Hb_000384_120 Hb_004672_010 Hb_004672_010 Hb_000417_260--Hb_004672_010 Hb_001008_090 Hb_001008_090 Hb_000417_260--Hb_001008_090 Hb_001481_140 Hb_001481_140 Hb_000417_260--Hb_001481_140 Hb_004374_140 Hb_004374_140 Hb_001461_010--Hb_004374_140 Hb_008544_010 Hb_008544_010 Hb_001461_010--Hb_008544_010 Hb_001842_040 Hb_001842_040 Hb_001461_010--Hb_001842_040 Hb_010042_010 Hb_010042_010 Hb_001461_010--Hb_010042_010 Hb_002631_020 Hb_002631_020 Hb_001461_010--Hb_002631_020 Hb_001461_010--Hb_000985_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.98903 5.19863 6.75256 16.6898 6.49048 11.1145
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.9046 28.7585 26.0455 9.95981 6.10659

CAGE analysis