Hb_114310_090

Information

Type -
Description -
Location Contig114310: 45605-48717
Sequence    

Annotation

kegg
ID rcu:RCOM_1596000
description cysteine protease, putative (EC:1.3.1.74)
nr
ID XP_012071947.1
description PREDICTED: low-temperature-induced cysteine proteinase [Jatropha curcas]
swissprot
ID P43297
description Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1
trembl
ID E6NU59
description JHL18I08.3 protein OS=Jatropha curcas GN=JHL18I08.3 PE=3 SV=1
Gene Ontology
ID GO:0005773
description low-temperature-induced cysteine proteinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04374: 45669-46015 , PASA_asmbl_04375: 46713-48474
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_114310_090 0.0 - - PREDICTED: low-temperature-induced cysteine proteinase [Jatropha curcas]
2 Hb_001243_040 0.0728554138 - - PREDICTED: uncharacterized protein LOC104104316 [Nicotiana tomentosiformis]
3 Hb_007416_330 0.0766299816 - - PREDICTED: elongation factor 1-alpha isoform X1 [Jatropha curcas]
4 Hb_032202_140 0.0828169782 - - PREDICTED: flap endonuclease GEN-like 1 [Jatropha curcas]
5 Hb_002013_020 0.0828850362 - - PREDICTED: uncharacterized protein LOC105641613 [Jatropha curcas]
6 Hb_001632_040 0.0836486606 - - PREDICTED: transmembrane protein adipocyte-associated 1 homolog isoform X1 [Jatropha curcas]
7 Hb_123915_040 0.085217113 - - PREDICTED: uncharacterized protein LOC105633952 [Jatropha curcas]
8 Hb_000025_640 0.0859708629 - - PREDICTED: probable magnesium transporter NIPA6 isoform X1 [Jatropha curcas]
9 Hb_000905_110 0.088029084 - - arginine/serine rich splicing factor sf4/14, putative [Ricinus communis]
10 Hb_021419_030 0.0921702605 - - hypothetical protein glysoja_023295 [Glycine soja]
11 Hb_005144_090 0.0947608995 - - PREDICTED: vacuolar protein sorting-associated protein 24 homolog 1-like [Citrus sinensis]
12 Hb_001235_150 0.0962310453 - - PREDICTED: chaperone protein dnaJ 13 isoform X1 [Jatropha curcas]
13 Hb_004254_090 0.0963577757 - - PREDICTED: cleavage stimulating factor 64 [Jatropha curcas]
14 Hb_000731_270 0.0981998645 - - PREDICTED: polyadenylate-binding protein RBP45B isoform X1 [Jatropha curcas]
15 Hb_001408_140 0.0992241695 - - hypothetical protein JCGZ_00234 [Jatropha curcas]
16 Hb_018133_040 0.0995335004 - - PREDICTED: probable apyrase 7 [Jatropha curcas]
17 Hb_000417_130 0.0996488222 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]
18 Hb_000317_470 0.1000729349 - - PREDICTED: CCR4-NOT transcription complex subunit 11 [Jatropha curcas]
19 Hb_156279_020 0.101515683 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
20 Hb_000006_040 0.1019343464 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]

Gene co-expression network

sample Hb_114310_090 Hb_114310_090 Hb_001243_040 Hb_001243_040 Hb_114310_090--Hb_001243_040 Hb_007416_330 Hb_007416_330 Hb_114310_090--Hb_007416_330 Hb_032202_140 Hb_032202_140 Hb_114310_090--Hb_032202_140 Hb_002013_020 Hb_002013_020 Hb_114310_090--Hb_002013_020 Hb_001632_040 Hb_001632_040 Hb_114310_090--Hb_001632_040 Hb_123915_040 Hb_123915_040 Hb_114310_090--Hb_123915_040 Hb_018133_040 Hb_018133_040 Hb_001243_040--Hb_018133_040 Hb_000731_270 Hb_000731_270 Hb_001243_040--Hb_000731_270 Hb_001243_040--Hb_001632_040 Hb_001696_010 Hb_001696_010 Hb_001243_040--Hb_001696_010 Hb_001322_170 Hb_001322_170 Hb_001243_040--Hb_001322_170 Hb_007894_110 Hb_007894_110 Hb_007416_330--Hb_007894_110 Hb_006017_010 Hb_006017_010 Hb_007416_330--Hb_006017_010 Hb_001221_080 Hb_001221_080 Hb_007416_330--Hb_001221_080 Hb_109980_010 Hb_109980_010 Hb_007416_330--Hb_109980_010 Hb_001408_140 Hb_001408_140 Hb_007416_330--Hb_001408_140 Hb_002600_020 Hb_002600_020 Hb_032202_140--Hb_002600_020 Hb_032202_140--Hb_002013_020 Hb_001163_050 Hb_001163_050 Hb_032202_140--Hb_001163_050 Hb_003001_080 Hb_003001_080 Hb_032202_140--Hb_003001_080 Hb_001456_060 Hb_001456_060 Hb_032202_140--Hb_001456_060 Hb_011995_010 Hb_011995_010 Hb_032202_140--Hb_011995_010 Hb_004052_080 Hb_004052_080 Hb_002013_020--Hb_004052_080 Hb_003513_010 Hb_003513_010 Hb_002013_020--Hb_003513_010 Hb_002013_020--Hb_001456_060 Hb_002013_020--Hb_001163_050 Hb_002876_230 Hb_002876_230 Hb_002013_020--Hb_002876_230 Hb_004414_060 Hb_004414_060 Hb_001632_040--Hb_004414_060 Hb_002276_170 Hb_002276_170 Hb_001632_040--Hb_002276_170 Hb_004907_080 Hb_004907_080 Hb_001632_040--Hb_004907_080 Hb_000342_130 Hb_000342_130 Hb_001632_040--Hb_000342_130 Hb_000417_130 Hb_000417_130 Hb_123915_040--Hb_000417_130 Hb_000317_470 Hb_000317_470 Hb_123915_040--Hb_000317_470 Hb_004254_090 Hb_004254_090 Hb_123915_040--Hb_004254_090 Hb_001357_250 Hb_001357_250 Hb_123915_040--Hb_001357_250 Hb_000905_110 Hb_000905_110 Hb_123915_040--Hb_000905_110 Hb_001021_150 Hb_001021_150 Hb_123915_040--Hb_001021_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.0178 9.83295 16.9567 10.6544 22.0182 11.2756
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.6414 17.9242 18.5478 15.011 14.6604

CAGE analysis