Hb_114310_120

Information

Type -
Description -
Location Contig114310: 67055-67264
Sequence    

Annotation

kegg
ID egr:104449004
description 50S ribosomal protein L31, chloroplastic
nr
ID XP_010061293.1
description PREDICTED: 50S ribosomal protein L31, chloroplastic [Eucalyptus grandis]
swissprot
ID Q9FWS4
description 50S ribosomal protein L31, chloroplastic OS=Arabidopsis thaliana GN=RPL31 PE=2 SV=1
trembl
ID A0A059BQC1
description 50S ribosomal protein L31 OS=Eucalyptus grandis GN=EUGRSUZ_F01878 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 50s ribosomal protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04379: 66862-67377
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_114310_120 0.0 - - PREDICTED: 50S ribosomal protein L31, chloroplastic [Eucalyptus grandis]
2 Hb_000345_130 0.156375178 - - unnamed protein product [Coffea canephora]
3 Hb_010998_050 0.1634724046 - - PREDICTED: kinesin-like protein KIF22 isoform X2 [Jatropha curcas]
4 Hb_084230_010 0.1835849487 - - PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X4 [Jatropha curcas]
5 Hb_004221_030 0.1863328037 transcription factor TF Family: bHLH PREDICTED: transcription factor SPATULA-like isoform X1 [Jatropha curcas]
6 Hb_005162_130 0.188388206 - - PREDICTED: uncharacterized protein LOC105648433 isoform X2 [Jatropha curcas]
7 Hb_036790_030 0.1899120565 - - PREDICTED: UPF0544 protein C5orf45 homolog [Jatropha curcas]
8 Hb_005504_040 0.2003060582 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002007_280 0.2111334045 - - PREDICTED: kinesin-like protein KIFC3 [Jatropha curcas]
10 Hb_003688_010 0.2131075935 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Jatropha curcas]
11 Hb_000345_410 0.2156458169 - - PREDICTED: kinesin-like protein KIFC3 [Jatropha curcas]
12 Hb_000349_230 0.2173409092 - - PREDICTED: protein TPX2 [Jatropha curcas]
13 Hb_001507_080 0.2242319626 - - PREDICTED: G2/mitotic-specific cyclin S13-7 [Jatropha curcas]
14 Hb_029510_130 0.2251581284 - - PREDICTED: malonate--CoA ligase [Jatropha curcas]
15 Hb_005725_150 0.2311314746 - - PREDICTED: kinesin-related protein 11 isoform X1 [Jatropha curcas]
16 Hb_011004_050 0.2363207675 - - PREDICTED: kinesin-13A [Jatropha curcas]
17 Hb_000739_270 0.2366171029 - - PREDICTED: serine/threonine-protein kinase Aurora-3 [Jatropha curcas]
18 Hb_008406_100 0.2371715946 - - PREDICTED: protein TPX2 isoform X2 [Jatropha curcas]
19 Hb_000668_060 0.2406334034 - - Pollen-specific protein C13 precursor, putative [Ricinus communis]
20 Hb_000960_090 0.2406814484 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_114310_120 Hb_114310_120 Hb_000345_130 Hb_000345_130 Hb_114310_120--Hb_000345_130 Hb_010998_050 Hb_010998_050 Hb_114310_120--Hb_010998_050 Hb_084230_010 Hb_084230_010 Hb_114310_120--Hb_084230_010 Hb_004221_030 Hb_004221_030 Hb_114310_120--Hb_004221_030 Hb_005162_130 Hb_005162_130 Hb_114310_120--Hb_005162_130 Hb_036790_030 Hb_036790_030 Hb_114310_120--Hb_036790_030 Hb_002007_280 Hb_002007_280 Hb_000345_130--Hb_002007_280 Hb_000345_130--Hb_005162_130 Hb_000349_230 Hb_000349_230 Hb_000345_130--Hb_000349_230 Hb_000345_130--Hb_010998_050 Hb_000345_410 Hb_000345_410 Hb_000345_130--Hb_000345_410 Hb_000345_130--Hb_036790_030 Hb_010998_050--Hb_036790_030 Hb_010998_050--Hb_000345_410 Hb_010998_050--Hb_002007_280 Hb_010998_050--Hb_000349_230 Hb_010998_050--Hb_005162_130 Hb_084230_010--Hb_004221_030 Hb_000984_220 Hb_000984_220 Hb_084230_010--Hb_000984_220 Hb_000500_350 Hb_000500_350 Hb_084230_010--Hb_000500_350 Hb_000800_020 Hb_000800_020 Hb_084230_010--Hb_000800_020 Hb_000905_120 Hb_000905_120 Hb_084230_010--Hb_000905_120 Hb_011381_040 Hb_011381_040 Hb_084230_010--Hb_011381_040 Hb_002027_320 Hb_002027_320 Hb_004221_030--Hb_002027_320 Hb_002783_220 Hb_002783_220 Hb_004221_030--Hb_002783_220 Hb_160256_010 Hb_160256_010 Hb_004221_030--Hb_160256_010 Hb_030545_010 Hb_030545_010 Hb_004221_030--Hb_030545_010 Hb_003874_010 Hb_003874_010 Hb_004221_030--Hb_003874_010 Hb_005162_130--Hb_000345_410 Hb_005162_130--Hb_002007_280 Hb_008406_100 Hb_008406_100 Hb_005162_130--Hb_008406_100 Hb_005162_130--Hb_000349_230 Hb_002307_020 Hb_002307_020 Hb_036790_030--Hb_002307_020 Hb_000739_270 Hb_000739_270 Hb_036790_030--Hb_000739_270 Hb_002007_040 Hb_002007_040 Hb_036790_030--Hb_002007_040 Hb_036790_030--Hb_000349_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.86979 0 37.0819 19.1021 5.96802 3.75238
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.54453 3.80535 3.19284 1.3335 3.32375

CAGE analysis