Hb_114336_020

Information

Type -
Description -
Location Contig114336: 43722-47497
Sequence    

Annotation

kegg
ID fve:101296070
description cytosolic Fe-S cluster assembly factor NARFL-like
nr
ID XP_004293383.1
description PREDICTED: cytosolic Fe-S cluster assembly factor narfl [Fragaria vesca subsp. vesca]
swissprot
ID Q5BK18
description Cytosolic Fe-S cluster assembly factor NARFL OS=Rattus norvegicus GN=Narfl PE=2 SV=1
trembl
ID A0A067L9L4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05395 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04380: 43968-47474
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_114336_020 0.0 - - PREDICTED: cytosolic Fe-S cluster assembly factor narfl [Fragaria vesca subsp. vesca]
2 Hb_001235_030 0.0736565833 - - PREDICTED: KH domain-containing protein At5g56140 [Vitis vinifera]
3 Hb_172932_010 0.0831450568 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_011534_030 0.0831601301 - - hypothetical protein POPTR_0008s08530g [Populus trichocarpa]
5 Hb_001775_110 0.0836700957 - - PREDICTED: probable ribosome biogenesis protein RLP24 [Jatropha curcas]
6 Hb_000398_040 0.0843796548 - - Auxin response factor, putative [Ricinus communis]
7 Hb_027625_010 0.0857995325 - - PREDICTED: protein sym-1-like [Jatropha curcas]
8 Hb_001014_230 0.087190987 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g11460 [Jatropha curcas]
9 Hb_000046_290 0.0882847775 - - PREDICTED: tubby-like F-box protein 3 [Tarenaya hassleriana]
10 Hb_001083_020 0.0905506223 - - -
11 Hb_004056_030 0.0941106729 - - hypothetical protein 33 [Hevea brasiliensis]
12 Hb_000260_570 0.0949002274 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_009393_210 0.0977397202 - - PREDICTED: MHC class II regulatory factor RFX1-like [Jatropha curcas]
14 Hb_000482_090 0.0977841101 - - PREDICTED: uncharacterized protein LOC105638145 [Jatropha curcas]
15 Hb_092107_010 0.0995364312 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003053_020 0.1000919759 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
17 Hb_000431_010 0.1007585557 - - hypothetical protein POPTR_0016s05340g [Populus trichocarpa]
18 Hb_002235_280 0.1013983307 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15300 [Jatropha curcas]
19 Hb_000617_150 0.1018642986 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61360-like [Jatropha curcas]
20 Hb_000108_190 0.1031211618 - - PREDICTED: dihydroorotate dehydrogenase (quinone), mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_114336_020 Hb_114336_020 Hb_001235_030 Hb_001235_030 Hb_114336_020--Hb_001235_030 Hb_172932_010 Hb_172932_010 Hb_114336_020--Hb_172932_010 Hb_011534_030 Hb_011534_030 Hb_114336_020--Hb_011534_030 Hb_001775_110 Hb_001775_110 Hb_114336_020--Hb_001775_110 Hb_000398_040 Hb_000398_040 Hb_114336_020--Hb_000398_040 Hb_027625_010 Hb_027625_010 Hb_114336_020--Hb_027625_010 Hb_005092_060 Hb_005092_060 Hb_001235_030--Hb_005092_060 Hb_001014_230 Hb_001014_230 Hb_001235_030--Hb_001014_230 Hb_008554_070 Hb_008554_070 Hb_001235_030--Hb_008554_070 Hb_001235_030--Hb_011534_030 Hb_002016_120 Hb_002016_120 Hb_001235_030--Hb_002016_120 Hb_172932_010--Hb_011534_030 Hb_001454_190 Hb_001454_190 Hb_172932_010--Hb_001454_190 Hb_000617_150 Hb_000617_150 Hb_172932_010--Hb_000617_150 Hb_009113_070 Hb_009113_070 Hb_172932_010--Hb_009113_070 Hb_086639_030 Hb_086639_030 Hb_172932_010--Hb_086639_030 Hb_002235_280 Hb_002235_280 Hb_172932_010--Hb_002235_280 Hb_011534_030--Hb_000617_150 Hb_003053_020 Hb_003053_020 Hb_011534_030--Hb_003053_020 Hb_019263_020 Hb_019263_020 Hb_011534_030--Hb_019263_020 Hb_011534_030--Hb_009113_070 Hb_011534_030--Hb_001454_190 Hb_001775_110--Hb_000398_040 Hb_001083_020 Hb_001083_020 Hb_001775_110--Hb_001083_020 Hb_000046_290 Hb_000046_290 Hb_001775_110--Hb_000046_290 Hb_001360_050 Hb_001360_050 Hb_001775_110--Hb_001360_050 Hb_011909_100 Hb_011909_100 Hb_001775_110--Hb_011909_100 Hb_000398_040--Hb_009113_070 Hb_000841_020 Hb_000841_020 Hb_000398_040--Hb_000841_020 Hb_000398_040--Hb_001083_020 Hb_000398_040--Hb_011534_030 Hb_000817_030 Hb_000817_030 Hb_027625_010--Hb_000817_030 Hb_027625_010--Hb_000046_290 Hb_011644_030 Hb_011644_030 Hb_027625_010--Hb_011644_030 Hb_000230_510 Hb_000230_510 Hb_027625_010--Hb_000230_510 Hb_011537_110 Hb_011537_110 Hb_027625_010--Hb_011537_110 Hb_000072_180 Hb_000072_180 Hb_027625_010--Hb_000072_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.34893 0.693321 1.19084 2.22173 2.6381 3.60945
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.47608 6.48241 7.79642 2.7394 3.61629

CAGE analysis