Hb_114343_010

Information

Type -
Description -
Location Contig114343: 3143-3434
Sequence    

Annotation

kegg
ID rcu:RCOM_1431330
description protein binding protein, putative
nr
ID XP_012089447.1
description PREDICTED: uncharacterized protein LOC105647831 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9RF44
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_1431330 PE=4 SV=1
Gene Ontology
ID GO:0008270
description protein binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04384: 3141-3597
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_114343_010 0.0 - - PREDICTED: uncharacterized protein LOC105647831 [Jatropha curcas]
2 Hb_012008_020 0.0760057709 - - PREDICTED: uncharacterized protein LOC104233229 [Nicotiana sylvestris]
3 Hb_144598_030 0.091981045 - - PREDICTED: mitotic apparatus protein p62 [Jatropha curcas]
4 Hb_000373_240 0.093686075 - - PREDICTED: uncharacterized protein LOC105640940 isoform X1 [Jatropha curcas]
5 Hb_029921_040 0.0953238381 - - conserved hypothetical protein [Ricinus communis]
6 Hb_010691_060 0.0980844051 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]
7 Hb_002391_300 0.0999078638 - - hypothetical protein PHAVU_002G104100g [Phaseolus vulgaris]
8 Hb_003333_060 0.1003095712 - - PREDICTED: uncharacterized protein LOC105628461 [Jatropha curcas]
9 Hb_001789_240 0.1013994159 - - hypothetical protein CICLE_v10032221mg [Citrus clementina]
10 Hb_000080_060 0.1022751058 - - RNA polymerase I, II and III subunit RPB8, partial [Manihot esculenta]
11 Hb_000384_090 0.1025180242 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
12 Hb_029510_140 0.102738703 - - PREDICTED: uncharacterized protein LOC105635017 [Jatropha curcas]
13 Hb_002107_160 0.1030698711 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
14 Hb_000103_080 0.1034594491 - - PREDICTED: ATP-dependent RNA helicase SUV3, mitochondrial [Jatropha curcas]
15 Hb_004440_050 0.1044978639 - - PREDICTED: anaphase-promoting complex subunit 10 [Cucumis melo]
16 Hb_002616_050 0.105075479 - - PREDICTED: traB domain-containing protein [Jatropha curcas]
17 Hb_003005_020 0.106639893 - - PREDICTED: DNA repair protein XRCC3 homolog [Jatropha curcas]
18 Hb_000157_030 0.1067499401 - - PREDICTED: cytochrome b5 domain-containing protein RLF [Jatropha curcas]
19 Hb_004944_010 0.1074025467 - - small nuclear ribonucleoprotein E [Hevea brasiliensis]
20 Hb_001518_040 0.1074593549 - - PREDICTED: G patch domain-containing protein 11 [Populus euphratica]

Gene co-expression network

sample Hb_114343_010 Hb_114343_010 Hb_012008_020 Hb_012008_020 Hb_114343_010--Hb_012008_020 Hb_144598_030 Hb_144598_030 Hb_114343_010--Hb_144598_030 Hb_000373_240 Hb_000373_240 Hb_114343_010--Hb_000373_240 Hb_029921_040 Hb_029921_040 Hb_114343_010--Hb_029921_040 Hb_010691_060 Hb_010691_060 Hb_114343_010--Hb_010691_060 Hb_002391_300 Hb_002391_300 Hb_114343_010--Hb_002391_300 Hb_003010_030 Hb_003010_030 Hb_012008_020--Hb_003010_030 Hb_001358_030 Hb_001358_030 Hb_012008_020--Hb_001358_030 Hb_009557_070 Hb_009557_070 Hb_012008_020--Hb_009557_070 Hb_000959_260 Hb_000959_260 Hb_012008_020--Hb_000959_260 Hb_002660_080 Hb_002660_080 Hb_012008_020--Hb_002660_080 Hb_012008_020--Hb_002391_300 Hb_020665_040 Hb_020665_040 Hb_144598_030--Hb_020665_040 Hb_007594_130 Hb_007594_130 Hb_144598_030--Hb_007594_130 Hb_002671_100 Hb_002671_100 Hb_144598_030--Hb_002671_100 Hb_004117_130 Hb_004117_130 Hb_144598_030--Hb_004117_130 Hb_004881_020 Hb_004881_020 Hb_144598_030--Hb_004881_020 Hb_002716_130 Hb_002716_130 Hb_144598_030--Hb_002716_130 Hb_000373_240--Hb_002391_300 Hb_000889_020 Hb_000889_020 Hb_000373_240--Hb_000889_020 Hb_003406_010 Hb_003406_010 Hb_000373_240--Hb_003406_010 Hb_007218_080 Hb_007218_080 Hb_000373_240--Hb_007218_080 Hb_001789_240 Hb_001789_240 Hb_000373_240--Hb_001789_240 Hb_000690_130 Hb_000690_130 Hb_000373_240--Hb_000690_130 Hb_000189_340 Hb_000189_340 Hb_029921_040--Hb_000189_340 Hb_002687_130 Hb_002687_130 Hb_029921_040--Hb_002687_130 Hb_002495_040 Hb_002495_040 Hb_029921_040--Hb_002495_040 Hb_029921_040--Hb_000373_240 Hb_000272_020 Hb_000272_020 Hb_029921_040--Hb_000272_020 Hb_001766_150 Hb_001766_150 Hb_010691_060--Hb_001766_150 Hb_000157_030 Hb_000157_030 Hb_010691_060--Hb_000157_030 Hb_003266_050 Hb_003266_050 Hb_010691_060--Hb_003266_050 Hb_185830_020 Hb_185830_020 Hb_010691_060--Hb_185830_020 Hb_010691_060--Hb_002391_300 Hb_003058_130 Hb_003058_130 Hb_010691_060--Hb_003058_130 Hb_002391_300--Hb_003406_010 Hb_000926_280 Hb_000926_280 Hb_002391_300--Hb_000926_280 Hb_004440_090 Hb_004440_090 Hb_002391_300--Hb_004440_090 Hb_012092_010 Hb_012092_010 Hb_002391_300--Hb_012092_010 Hb_002391_300--Hb_007218_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
65.1593 19.1421 29.9133 37.4118 74.2635 141.554
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
64.9826 99.2821 39.4389 32.3694 40.8336

CAGE analysis