Hb_114674_010

Information

Type -
Description -
Location Contig114674: 40-1104
Sequence    

Annotation

kegg
ID cit:102623211
description putative disease resistance protein RGA1-like
nr
ID KDP43125.1
description hypothetical protein JCGZ_26658 [Jatropha curcas]
swissprot
ID Q7XA39
description Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1
trembl
ID A0A067LF36
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26658 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_114674_010 0.0 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
2 Hb_008203_020 0.1559589405 - - protein kinase, putative [Ricinus communis]
3 Hb_114250_010 0.1757973483 - - conserved hypothetical protein [Ricinus communis]
4 Hb_115513_030 0.1947649586 - - PREDICTED: uncharacterized protein At2g34160 [Jatropha curcas]
5 Hb_095575_010 0.2000600175 - - hypothetical protein JCGZ_19529 [Jatropha curcas]
6 Hb_029689_010 0.2015024649 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
7 Hb_181824_010 0.2019034372 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
8 Hb_007951_120 0.2072812085 - - PREDICTED: uncharacterized protein At1g15400 [Populus euphratica]
9 Hb_000819_040 0.2096462045 - - ATP binding protein, putative [Ricinus communis]
10 Hb_033149_020 0.2106543025 - - hypothetical protein JCGZ_07831 [Jatropha curcas]
11 Hb_016404_010 0.2256367313 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
12 Hb_000926_110 0.2277555785 - - Mitogen-activated protein kinase kinase kinase, putative [Ricinus communis]
13 Hb_185080_010 0.2293435365 - - -
14 Hb_056012_010 0.2320095299 - - PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
15 Hb_000045_140 0.2337459619 - - PREDICTED: nematode resistance protein-like HSPRO2 [Jatropha curcas]
16 Hb_000270_850 0.2348526368 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000284_180 0.2362052839 - - hypothetical protein EUGRSUZ_B01865 [Eucalyptus grandis]
18 Hb_074184_010 0.2413629568 - - eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
19 Hb_000960_010 0.2431012945 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
20 Hb_003913_030 0.2436745687 - - PREDICTED: uncharacterized protein LOC105640313 [Jatropha curcas]

Gene co-expression network

sample Hb_114674_010 Hb_114674_010 Hb_008203_020 Hb_008203_020 Hb_114674_010--Hb_008203_020 Hb_114250_010 Hb_114250_010 Hb_114674_010--Hb_114250_010 Hb_115513_030 Hb_115513_030 Hb_114674_010--Hb_115513_030 Hb_095575_010 Hb_095575_010 Hb_114674_010--Hb_095575_010 Hb_029689_010 Hb_029689_010 Hb_114674_010--Hb_029689_010 Hb_181824_010 Hb_181824_010 Hb_114674_010--Hb_181824_010 Hb_074184_010 Hb_074184_010 Hb_008203_020--Hb_074184_010 Hb_007951_120 Hb_007951_120 Hb_008203_020--Hb_007951_120 Hb_008203_020--Hb_115513_030 Hb_007188_060 Hb_007188_060 Hb_008203_020--Hb_007188_060 Hb_015928_020 Hb_015928_020 Hb_008203_020--Hb_015928_020 Hb_114250_010--Hb_115513_030 Hb_114250_010--Hb_008203_020 Hb_049884_010 Hb_049884_010 Hb_114250_010--Hb_049884_010 Hb_114250_010--Hb_015928_020 Hb_114250_010--Hb_029689_010 Hb_002897_020 Hb_002897_020 Hb_115513_030--Hb_002897_020 Hb_000819_020 Hb_000819_020 Hb_115513_030--Hb_000819_020 Hb_000836_180 Hb_000836_180 Hb_115513_030--Hb_000836_180 Hb_033327_010 Hb_033327_010 Hb_095575_010--Hb_033327_010 Hb_000926_110 Hb_000926_110 Hb_095575_010--Hb_000926_110 Hb_000594_110 Hb_000594_110 Hb_095575_010--Hb_000594_110 Hb_003913_030 Hb_003913_030 Hb_095575_010--Hb_003913_030 Hb_000836_160 Hb_000836_160 Hb_095575_010--Hb_000836_160 Hb_186589_010 Hb_186589_010 Hb_095575_010--Hb_186589_010 Hb_000059_260 Hb_000059_260 Hb_029689_010--Hb_000059_260 Hb_002311_150 Hb_002311_150 Hb_029689_010--Hb_002311_150 Hb_183192_010 Hb_183192_010 Hb_029689_010--Hb_183192_010 Hb_029689_010--Hb_074184_010 Hb_007120_010 Hb_007120_010 Hb_029689_010--Hb_007120_010 Hb_033149_020 Hb_033149_020 Hb_029689_010--Hb_033149_020 Hb_005568_060 Hb_005568_060 Hb_181824_010--Hb_005568_060 Hb_181824_010--Hb_033149_020 Hb_001846_040 Hb_001846_040 Hb_181824_010--Hb_001846_040 Hb_000045_140 Hb_000045_140 Hb_181824_010--Hb_000045_140 Hb_016404_010 Hb_016404_010 Hb_181824_010--Hb_016404_010 Hb_138628_010 Hb_138628_010 Hb_181824_010--Hb_138628_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.04361 5.81742 2.09592 1.33141 0.0452063 0.776928
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0869645 0 0.367863 0

CAGE analysis