Hb_114684_020

Information

Type -
Description -
Location Contig114684: 7980-10057
Sequence    

Annotation

kegg
ID pop:POPTR_0010s15270g
description POPTRDRAFT_769807; Glucan endo-1 family protein
nr
ID AFJ97274.1
description beta-1,3-glucanase [Hevea brasiliensis]
swissprot
ID P52407
description Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform OS=Hevea brasiliensis GN=HGN1 PE=1 SV=2
trembl
ID I2EC77
description Beta-1,3-glucanase OS=Hevea brasiliensis GN=Gln5 PE=3 SV=1
Gene Ontology
ID GO:0004553
description beta- -glucanase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04439: 8457-9900
cDNA
(Sanger)
(ID:Location)		 043_M14.ab1: 8983-9899

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_114684_020 0.0 - - beta-1,3-glucanase [Hevea brasiliensis]
2 Hb_003001_030 0.0753088684 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
3 Hb_000304_020 0.0860661786 - - beta-1,3-glucanase form RRII Gln 3 [Hevea brasiliensis]
4 Hb_000771_140 0.0881477543 - - PREDICTED: abscisic acid receptor PYL8 [Jatropha curcas]
5 Hb_001767_010 0.0897882047 - - PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
6 Hb_000387_080 0.0905739218 - - PREDICTED: protein IQ-DOMAIN 1 isoform X2 [Jatropha curcas]
7 Hb_002609_260 0.0910719454 - - CCCH-type zinc finger protein [Hevea brasiliensis]
8 Hb_000057_060 0.0935893136 - - PREDICTED: uncharacterized protein LOC105634990 isoform X4 [Jatropha curcas]
9 Hb_001366_220 0.0950786086 - - conserved hypothetical protein [Ricinus communis]
10 Hb_011174_070 0.0983199294 - - PREDICTED: pentatricopeptide repeat-containing protein At5g06540-like [Jatropha curcas]
11 Hb_009510_030 0.099114325 - - PREDICTED: phosphoinositide phospholipase C 2-like [Jatropha curcas]
12 Hb_005245_090 0.1038736676 - - PREDICTED: peroxisomal membrane protein 13 [Jatropha curcas]
13 Hb_000849_040 0.1063308256 - - transcription factor, putative [Ricinus communis]
14 Hb_000809_040 0.1084652325 - - Serine/threonine-protein kinase SAPK10, putative [Ricinus communis]
15 Hb_027751_020 0.1108667804 - - PREDICTED: uncharacterized protein LOC104886652 [Beta vulgaris subsp. vulgaris]
16 Hb_000264_190 0.1121949805 - - sphingolipid delta 4 desaturase/C-4 hydroxylase protein des2, putative [Ricinus communis]
17 Hb_002890_220 0.1131478768 - - hypothetical protein JCGZ_24899 [Jatropha curcas]
18 Hb_002357_040 0.114659498 - - latex-abundant protein [Hevea brasiliensis]
19 Hb_000249_110 0.1148115137 - - hypothetical protein JCGZ_22462 [Jatropha curcas]
20 Hb_005730_020 0.1152464111 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF3.1-like [Jatropha curcas]

Gene co-expression network

sample Hb_114684_020 Hb_114684_020 Hb_003001_030 Hb_003001_030 Hb_114684_020--Hb_003001_030 Hb_000304_020 Hb_000304_020 Hb_114684_020--Hb_000304_020 Hb_000771_140 Hb_000771_140 Hb_114684_020--Hb_000771_140 Hb_001767_010 Hb_001767_010 Hb_114684_020--Hb_001767_010 Hb_000387_080 Hb_000387_080 Hb_114684_020--Hb_000387_080 Hb_002609_260 Hb_002609_260 Hb_114684_020--Hb_002609_260 Hb_009510_030 Hb_009510_030 Hb_003001_030--Hb_009510_030 Hb_005730_020 Hb_005730_020 Hb_003001_030--Hb_005730_020 Hb_003001_030--Hb_002609_260 Hb_004126_010 Hb_004126_010 Hb_003001_030--Hb_004126_010 Hb_000249_110 Hb_000249_110 Hb_003001_030--Hb_000249_110 Hb_000849_040 Hb_000849_040 Hb_000304_020--Hb_000849_040 Hb_001366_220 Hb_001366_220 Hb_000304_020--Hb_001366_220 Hb_031403_010 Hb_031403_010 Hb_000304_020--Hb_031403_010 Hb_006787_040 Hb_006787_040 Hb_000304_020--Hb_006787_040 Hb_005245_090 Hb_005245_090 Hb_000304_020--Hb_005245_090 Hb_000771_140--Hb_009510_030 Hb_000057_060 Hb_000057_060 Hb_000771_140--Hb_000057_060 Hb_000771_140--Hb_005245_090 Hb_026048_090 Hb_026048_090 Hb_000771_140--Hb_026048_090 Hb_001433_170 Hb_001433_170 Hb_000771_140--Hb_001433_170 Hb_000771_140--Hb_000387_080 Hb_000427_030 Hb_000427_030 Hb_001767_010--Hb_000427_030 Hb_011174_070 Hb_011174_070 Hb_001767_010--Hb_011174_070 Hb_001767_010--Hb_003001_030 Hb_001767_010--Hb_000249_110 Hb_000380_180 Hb_000380_180 Hb_001767_010--Hb_000380_180 Hb_003057_120 Hb_003057_120 Hb_000387_080--Hb_003057_120 Hb_000387_080--Hb_001366_220 Hb_000387_080--Hb_000057_060 Hb_010174_120 Hb_010174_120 Hb_000387_080--Hb_010174_120 Hb_000387_080--Hb_011174_070 Hb_006602_020 Hb_006602_020 Hb_000387_080--Hb_006602_020 Hb_000264_190 Hb_000264_190 Hb_002609_260--Hb_000264_190 Hb_010931_100 Hb_010931_100 Hb_002609_260--Hb_010931_100 Hb_002609_260--Hb_005730_020 Hb_005488_100 Hb_005488_100 Hb_002609_260--Hb_005488_100 Hb_027751_020 Hb_027751_020 Hb_002609_260--Hb_027751_020 Hb_000563_540 Hb_000563_540 Hb_002609_260--Hb_000563_540
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
181.247 16.873 1.42094 6.93099 222.525 179.115
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
181.14 116.746 224.464 46.6059 8.75253

CAGE analysis