Hb_114868_010

Information

Type -
Description -
Location Contig114868: 3218-4524
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_114868_010 0.0 - - -
2 Hb_001584_230 0.1612886088 - - invertase/pectin methylesterase inhibitor family protein [Populus trichocarpa]
3 Hb_081636_010 0.163981568 - - -
4 Hb_005799_030 0.1751990781 - - PREDICTED: uncharacterized protein LOC103926623 [Pyrus x bretschneideri]
5 Hb_029866_010 0.1760432735 - - -
6 Hb_001135_270 0.1765545203 - - -
7 Hb_009686_010 0.1822917815 - - mitochondrial thioredoxin 2 [Hevea brasiliensis]
8 Hb_027255_010 0.1884333384 transcription factor TF Family: Orphans conserved hypothetical protein [Ricinus communis]
9 Hb_134732_010 0.1889210353 - - -
10 Hb_013983_010 0.1889507752 - - hypothetical protein PRUPE_ppa016763mg, partial [Prunus persica]
11 Hb_000123_390 0.2005285261 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005116_020 0.2055377176 - - PREDICTED: DNA repair helicase UVH6 isoform X2 [Sesamum indicum]
13 Hb_000205_070 0.2063850819 - - kinase, putative [Ricinus communis]
14 Hb_033225_020 0.2081759982 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001951_120 0.2143243968 - - -
16 Hb_000176_060 0.2207294532 - - unnamed protein product [Vitis vinifera]
17 Hb_001159_210 0.2238660153 - - PREDICTED: MATE efflux family protein DTX1 [Jatropha curcas]
18 Hb_022452_010 0.2241726897 - - -
19 Hb_000345_480 0.2258394489 - - cyclin-dependent protein kinase, putative [Ricinus communis]
20 Hb_002983_100 0.2313228242 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF084 [Jatropha curcas]

Gene co-expression network

sample Hb_114868_010 Hb_114868_010 Hb_001584_230 Hb_001584_230 Hb_114868_010--Hb_001584_230 Hb_081636_010 Hb_081636_010 Hb_114868_010--Hb_081636_010 Hb_005799_030 Hb_005799_030 Hb_114868_010--Hb_005799_030 Hb_029866_010 Hb_029866_010 Hb_114868_010--Hb_029866_010 Hb_001135_270 Hb_001135_270 Hb_114868_010--Hb_001135_270 Hb_009686_010 Hb_009686_010 Hb_114868_010--Hb_009686_010 Hb_001584_230--Hb_005799_030 Hb_001584_230--Hb_001135_270 Hb_001584_230--Hb_081636_010 Hb_000123_390 Hb_000123_390 Hb_001584_230--Hb_000123_390 Hb_001584_230--Hb_029866_010 Hb_001899_010 Hb_001899_010 Hb_001584_230--Hb_001899_010 Hb_081636_010--Hb_001135_270 Hb_081636_010--Hb_005799_030 Hb_013983_010 Hb_013983_010 Hb_081636_010--Hb_013983_010 Hb_067345_050 Hb_067345_050 Hb_081636_010--Hb_067345_050 Hb_081636_010--Hb_029866_010 Hb_005799_030--Hb_001135_270 Hb_005799_030--Hb_000123_390 Hb_005799_030--Hb_001899_010 Hb_179763_010 Hb_179763_010 Hb_005799_030--Hb_179763_010 Hb_029866_010--Hb_013983_010 Hb_001125_030 Hb_001125_030 Hb_029866_010--Hb_001125_030 Hb_033225_020 Hb_033225_020 Hb_029866_010--Hb_033225_020 Hb_059126_010 Hb_059126_010 Hb_029866_010--Hb_059126_010 Hb_000345_480 Hb_000345_480 Hb_029866_010--Hb_000345_480 Hb_001135_270--Hb_067345_050 Hb_001135_270--Hb_000123_390 Hb_001135_270--Hb_001899_010 Hb_027255_010 Hb_027255_010 Hb_009686_010--Hb_027255_010 Hb_009686_010--Hb_001899_010 Hb_003529_220 Hb_003529_220 Hb_009686_010--Hb_003529_220 Hb_009686_010--Hb_005799_030 Hb_003529_210 Hb_003529_210 Hb_009686_010--Hb_003529_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.139256 0.0426661 0 0 0.542058 0.245473
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis