Hb_114874_010

Information

Type -
Description -
Location Contig114874: 12-607
Sequence    

Annotation

kegg
ID tcc:TCM_023639
description hypothetical protein
nr
ID XP_009777389.1
description PREDICTED: uncharacterized protein LOC104226968, partial [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID A0A061EWB4
description Uncharacterized protein OS=Theobroma cacao GN=TCM_023639 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_114874_010 0.0 - - PREDICTED: uncharacterized protein LOC104226968, partial [Nicotiana sylvestris]
2 Hb_150200_010 0.1859744563 - - PREDICTED: uncharacterized protein LOC105632410 [Jatropha curcas]
3 Hb_004714_020 0.191581684 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
4 Hb_002536_020 0.2441158822 - - PREDICTED: uncharacterized protein LOC105801112 [Gossypium raimondii]
5 Hb_004116_010 0.2450849303 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
6 Hb_007749_030 0.2502272594 - - -
7 Hb_115572_040 0.2839737472 - - PREDICTED: uncharacterized protein LOC105632710 [Jatropha curcas]
8 Hb_008375_020 0.2893064431 - - PREDICTED: uncharacterized protein LOC104894372 [Beta vulgaris subsp. vulgaris]
9 Hb_008305_010 0.2907455139 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_123951_010 0.2921948795 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
11 Hb_005352_010 0.294087564 - - -
12 Hb_003607_100 0.2944343979 - - PREDICTED: zinc finger protein 3 [Jatropha curcas]
13 Hb_028910_010 0.294993901 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
14 Hb_003155_060 0.301857976 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
15 Hb_000576_100 0.3020625613 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
16 Hb_108768_010 0.304679845 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
17 Hb_183191_020 0.3050209472 - - conserved hypothetical protein [Ricinus communis]
18 Hb_022599_010 0.3064694975 - - Uncharacterized protein TCM_010507 [Theobroma cacao]
19 Hb_188450_010 0.3077912114 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_027522_020 0.3079189977 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_114874_010 Hb_114874_010 Hb_150200_010 Hb_150200_010 Hb_114874_010--Hb_150200_010 Hb_004714_020 Hb_004714_020 Hb_114874_010--Hb_004714_020 Hb_002536_020 Hb_002536_020 Hb_114874_010--Hb_002536_020 Hb_004116_010 Hb_004116_010 Hb_114874_010--Hb_004116_010 Hb_007749_030 Hb_007749_030 Hb_114874_010--Hb_007749_030 Hb_115572_040 Hb_115572_040 Hb_114874_010--Hb_115572_040 Hb_150200_010--Hb_004714_020 Hb_023161_030 Hb_023161_030 Hb_150200_010--Hb_023161_030 Hb_108768_010 Hb_108768_010 Hb_150200_010--Hb_108768_010 Hb_000576_100 Hb_000576_100 Hb_150200_010--Hb_000576_100 Hb_003155_060 Hb_003155_060 Hb_150200_010--Hb_003155_060 Hb_004714_020--Hb_023161_030 Hb_189003_030 Hb_189003_030 Hb_004714_020--Hb_189003_030 Hb_012305_080 Hb_012305_080 Hb_004714_020--Hb_012305_080 Hb_004714_020--Hb_108768_010 Hb_002536_020--Hb_007749_030 Hb_002536_020--Hb_003155_060 Hb_002536_020--Hb_000576_100 Hb_002536_020--Hb_108768_010 Hb_003607_100 Hb_003607_100 Hb_002536_020--Hb_003607_100 Hb_002536_020--Hb_115572_040 Hb_103806_010 Hb_103806_010 Hb_004116_010--Hb_103806_010 Hb_010121_020 Hb_010121_020 Hb_004116_010--Hb_010121_020 Hb_004116_010--Hb_115572_040 Hb_003376_240 Hb_003376_240 Hb_004116_010--Hb_003376_240 Hb_004116_010--Hb_003607_100 Hb_007749_030--Hb_003155_060 Hb_007749_030--Hb_000576_100 Hb_007749_030--Hb_108768_010 Hb_003487_010 Hb_003487_010 Hb_007749_030--Hb_003487_010 Hb_007749_030--Hb_003607_100 Hb_115572_040--Hb_003376_240 Hb_000504_210 Hb_000504_210 Hb_115572_040--Hb_000504_210 Hb_028910_010 Hb_028910_010 Hb_115572_040--Hb_028910_010 Hb_115572_040--Hb_007749_030 Hb_008375_020 Hb_008375_020 Hb_115572_040--Hb_008375_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.081254
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.115586 0 0 0.0374657 0.519219

CAGE analysis