Hb_114893_030

Information

Type -
Description -
Location Contig114893: 30487-33061
Sequence    

Annotation

kegg
ID rcu:RCOM_1678500
description ribosome recycling factor, putative
nr
ID XP_012070761.1
description PREDICTED: ribosome-recycling factor, chloroplastic [Jatropha curcas]
swissprot
ID Q39W85
description Ribosome-recycling factor OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=frr PE=3 SV=1
trembl
ID A0A067LP89
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10154 PE=4 SV=1
Gene Ontology
ID GO:0005739
description ribosome recycling factor

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04496: 30706-33000 , PASA_asmbl_04497: 30458-33051
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_114893_030 0.0 - - PREDICTED: ribosome-recycling factor, chloroplastic [Jatropha curcas]
2 Hb_002518_080 0.0797736117 - - PREDICTED: uncharacterized protein LOC105639837 [Jatropha curcas]
3 Hb_022425_040 0.0829724352 - - PREDICTED: probable RNA methyltransferase At5g51130 [Jatropha curcas]
4 Hb_000258_350 0.0835046557 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
5 Hb_000917_110 0.0837163277 - - PREDICTED: nudix hydrolase 1 [Jatropha curcas]
6 Hb_000127_180 0.0854569863 - - 40S ribosomal protein S18, putative [Ricinus communis]
7 Hb_015279_010 0.0876787765 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
8 Hb_003992_240 0.0898154774 - - -
9 Hb_000012_220 0.0917399922 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000698_030 0.0959378662 - - PREDICTED: 60S ribosomal protein L8 [Jatropha curcas]
11 Hb_001540_010 0.0977701047 - - PREDICTED: uncharacterized protein LOC105639920 [Jatropha curcas]
12 Hb_005322_040 0.1004571925 - - 60S ribosomal protein L9, putative [Ricinus communis]
13 Hb_009265_090 0.1006983294 - - PREDICTED: uncharacterized protein LOC105649618 [Jatropha curcas]
14 Hb_011609_100 0.1009890311 - - PREDICTED: 30S ribosomal protein 3, chloroplastic-like [Jatropha curcas]
15 Hb_001252_110 0.101161107 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
16 Hb_001766_110 0.1031759047 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Jatropha curcas]
17 Hb_001979_040 0.1039157196 - - PREDICTED: 60S ribosomal protein L21-1-like [Gossypium raimondii]
18 Hb_002868_010 0.1044931407 - - 60S ribosomal protein L30, putative [Ricinus communis]
19 Hb_001504_020 0.1056118375 - - 40S ribosomal protein S12A [Hevea brasiliensis]
20 Hb_027472_040 0.1059694002 - - SKP1 [Hevea brasiliensis]

Gene co-expression network

sample Hb_114893_030 Hb_114893_030 Hb_002518_080 Hb_002518_080 Hb_114893_030--Hb_002518_080 Hb_022425_040 Hb_022425_040 Hb_114893_030--Hb_022425_040 Hb_000258_350 Hb_000258_350 Hb_114893_030--Hb_000258_350 Hb_000917_110 Hb_000917_110 Hb_114893_030--Hb_000917_110 Hb_000127_180 Hb_000127_180 Hb_114893_030--Hb_000127_180 Hb_015279_010 Hb_015279_010 Hb_114893_030--Hb_015279_010 Hb_002518_080--Hb_022425_040 Hb_002518_080--Hb_000127_180 Hb_000217_030 Hb_000217_030 Hb_002518_080--Hb_000217_030 Hb_002518_080--Hb_015279_010 Hb_001504_110 Hb_001504_110 Hb_002518_080--Hb_001504_110 Hb_000815_060 Hb_000815_060 Hb_022425_040--Hb_000815_060 Hb_022425_040--Hb_015279_010 Hb_022425_040--Hb_000217_030 Hb_022425_040--Hb_000127_180 Hb_001832_060 Hb_001832_060 Hb_022425_040--Hb_001832_060 Hb_000698_030 Hb_000698_030 Hb_000258_350--Hb_000698_030 Hb_011609_100 Hb_011609_100 Hb_000258_350--Hb_011609_100 Hb_172632_090 Hb_172632_090 Hb_000258_350--Hb_172632_090 Hb_009265_090 Hb_009265_090 Hb_000258_350--Hb_009265_090 Hb_003126_080 Hb_003126_080 Hb_000258_350--Hb_003126_080 Hb_046049_010 Hb_046049_010 Hb_000917_110--Hb_046049_010 Hb_009793_010 Hb_009793_010 Hb_000917_110--Hb_009793_010 Hb_000007_100 Hb_000007_100 Hb_000917_110--Hb_000007_100 Hb_004800_230 Hb_004800_230 Hb_000917_110--Hb_004800_230 Hb_000917_110--Hb_015279_010 Hb_002768_030 Hb_002768_030 Hb_000127_180--Hb_002768_030 Hb_001780_040 Hb_001780_040 Hb_000127_180--Hb_001780_040 Hb_000127_180--Hb_001504_110 Hb_000127_180--Hb_001832_060 Hb_000025_620 Hb_000025_620 Hb_000127_180--Hb_000025_620 Hb_003787_010 Hb_003787_010 Hb_015279_010--Hb_003787_010 Hb_000667_070 Hb_000667_070 Hb_015279_010--Hb_000667_070 Hb_004116_190 Hb_004116_190 Hb_015279_010--Hb_004116_190 Hb_000920_110 Hb_000920_110 Hb_015279_010--Hb_000920_110 Hb_011671_100 Hb_011671_100 Hb_015279_010--Hb_011671_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.6155 8.03549 7.88429 4.74984 7.76948 10.9322
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.8385 28.771 10.3219 9.64859 3.04428

CAGE analysis