Hb_114932_010

Information

Type -
Description -
Location Contig114932: 18-530
Sequence    

Annotation

kegg
ID rcu:RCOM_1049530
description serine-threonine protein kinase, plant-type, putative (EC:2.7.12.2 1.3.1.74)
nr
ID XP_002514220.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q9SGP2
description Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana GN=HSL1 PE=2 SV=1
trembl
ID B9RKH6
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1049530 PE=3 SV=1
Gene Ontology
ID GO:0016021
description receptor-like protein kinase 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_114932_010 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_009707_010 0.0578834163 - - PREDICTED: LOW QUALITY PROTEIN: exocyst complex component EXO70B1-like [Jatropha curcas]
3 Hb_000338_020 0.0579512515 - - PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
4 Hb_009683_060 0.0675876555 - - -
5 Hb_000904_090 0.0801989952 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF109-like [Jatropha curcas]
6 Hb_000086_600 0.0823708261 - - -
7 Hb_167802_010 0.0829090532 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
8 Hb_104855_020 0.0832526994 - - ankyrin repeat-containing protein, putative [Ricinus communis]
9 Hb_125201_010 0.0833081678 - - hypothetical protein POPTR_0004s03690g [Populus trichocarpa]
10 Hb_064692_010 0.0974197262 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
11 Hb_117602_010 0.0977873028 - - dimethylaniline monooxygenase, putative [Ricinus communis]
12 Hb_000227_410 0.102209603 - - PREDICTED: uncharacterized protein LOC105631970 [Jatropha curcas]
13 Hb_041534_010 0.1057325898 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF017 [Jatropha curcas]
14 Hb_147137_020 0.1058335421 - - hypothetical protein JCGZ_07227 [Jatropha curcas]
15 Hb_142691_010 0.1079972914 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
16 Hb_008579_010 0.1083289944 - - hypothetical protein JCGZ_01311 [Jatropha curcas]
17 Hb_001565_050 0.1083465765 - - PREDICTED: receptor-like protein kinase 5 [Eucalyptus grandis]
18 Hb_005618_020 0.110081702 - - hypothetical protein RCOM_1342750 [Ricinus communis]
19 Hb_002486_030 0.1133780135 - - PREDICTED: nuclear speckle splicing regulatory protein 1-like [Jatropha curcas]
20 Hb_001623_020 0.1163919181 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_114932_010 Hb_114932_010 Hb_009707_010 Hb_009707_010 Hb_114932_010--Hb_009707_010 Hb_000338_020 Hb_000338_020 Hb_114932_010--Hb_000338_020 Hb_009683_060 Hb_009683_060 Hb_114932_010--Hb_009683_060 Hb_000904_090 Hb_000904_090 Hb_114932_010--Hb_000904_090 Hb_000086_600 Hb_000086_600 Hb_114932_010--Hb_000086_600 Hb_167802_010 Hb_167802_010 Hb_114932_010--Hb_167802_010 Hb_125201_010 Hb_125201_010 Hb_009707_010--Hb_125201_010 Hb_009707_010--Hb_000338_020 Hb_009707_010--Hb_000086_600 Hb_009707_010--Hb_000904_090 Hb_009707_010--Hb_009683_060 Hb_064692_010 Hb_064692_010 Hb_000338_020--Hb_064692_010 Hb_000338_020--Hb_009683_060 Hb_000338_020--Hb_125201_010 Hb_000338_020--Hb_167802_010 Hb_009683_060--Hb_167802_010 Hb_104855_020 Hb_104855_020 Hb_009683_060--Hb_104855_020 Hb_001623_020 Hb_001623_020 Hb_009683_060--Hb_001623_020 Hb_009683_060--Hb_000904_090 Hb_000227_410 Hb_000227_410 Hb_000904_090--Hb_000227_410 Hb_000904_090--Hb_104855_020 Hb_048538_010 Hb_048538_010 Hb_000904_090--Hb_048538_010 Hb_002475_110 Hb_002475_110 Hb_000904_090--Hb_002475_110 Hb_000904_090--Hb_167802_010 Hb_117602_010 Hb_117602_010 Hb_000086_600--Hb_117602_010 Hb_005618_020 Hb_005618_020 Hb_000086_600--Hb_005618_020 Hb_005843_080 Hb_005843_080 Hb_000086_600--Hb_005843_080 Hb_147137_020 Hb_147137_020 Hb_000086_600--Hb_147137_020 Hb_167802_010--Hb_001623_020 Hb_167802_010--Hb_104855_020 Hb_025477_030 Hb_025477_030 Hb_167802_010--Hb_025477_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.110101 30.5919 4.77157 5.42721 0.0517727 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0419419 0

CAGE analysis