Hb_114984_010

Information

Type -
Description -
Location Contig114984: 2277-6946
Sequence    

Annotation

kegg
ID rcu:RCOM_1382930
description hypothetical protein
nr
ID XP_002522105.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9LMU1
description Probable zinc metallopeptidase EGY3, chloroplastic OS=Arabidopsis thaliana GN=EGY3 PE=2 SV=1
trembl
ID B9S7Y9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1382930 PE=4 SV=1
Gene Ontology
ID GO:0016740
description atp phosphoribosyltransferase regulatory subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04513: 6184-6308
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_114984_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004920_060 0.1131525289 - - PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Jatropha curcas]
3 Hb_001731_020 0.1216490014 - - PREDICTED: T-complex protein 1 subunit gamma-like [Jatropha curcas]
4 Hb_000997_410 0.1267415495 - - PREDICTED: uncharacterized protein LOC105632066 [Jatropha curcas]
5 Hb_001489_070 0.1425384626 - - PREDICTED: uncharacterized protein LOC105649777 [Jatropha curcas]
6 Hb_000116_460 0.1439550378 - - PREDICTED: plant intracellular Ras-group-related LRR protein 4 [Jatropha curcas]
7 Hb_000021_020 0.1448071432 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Malus domestica]
8 Hb_004376_030 0.1526416259 transcription factor TF Family: mTERF hypothetical protein PHAVU_005G060900g [Phaseolus vulgaris]
9 Hb_128376_010 0.1547259176 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_035318_010 0.1566403382 - - PREDICTED: uncharacterized protein LOC105645250 [Jatropha curcas]
11 Hb_006915_020 0.1581047543 - - PREDICTED: formamidopyrimidine-DNA glycosylase isoform X1 [Jatropha curcas]
12 Hb_008246_030 0.1590510428 transcription factor TF Family: C3H tRNA-dihydrouridine synthase, putative [Ricinus communis]
13 Hb_000261_290 0.1623363847 - - eukaryotic translation elongation factor 1-alpha [Hevea brasiliensis]
14 Hb_001901_080 0.1625695061 - - PREDICTED: xylose isomerase [Jatropha curcas]
15 Hb_001473_080 0.1625970486 - - peroxisomal 3-keto-acyl-CoA thiolase [Hevea brasiliensis]
16 Hb_063409_020 0.1630822584 - - Calcium-binding protein, putative [Ricinus communis]
17 Hb_004218_070 0.1641366188 - - annexin [Manihot esculenta]
18 Hb_001916_060 0.1655880453 - - PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 isoform X2 [Jatropha curcas]
19 Hb_078477_040 0.1658869719 - - nuclear movement protein nudc, putative [Ricinus communis]
20 Hb_050686_010 0.1660398778 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_114984_010 Hb_114984_010 Hb_004920_060 Hb_004920_060 Hb_114984_010--Hb_004920_060 Hb_001731_020 Hb_001731_020 Hb_114984_010--Hb_001731_020 Hb_000997_410 Hb_000997_410 Hb_114984_010--Hb_000997_410 Hb_001489_070 Hb_001489_070 Hb_114984_010--Hb_001489_070 Hb_000116_460 Hb_000116_460 Hb_114984_010--Hb_000116_460 Hb_000021_020 Hb_000021_020 Hb_114984_010--Hb_000021_020 Hb_078477_040 Hb_078477_040 Hb_004920_060--Hb_078477_040 Hb_004920_060--Hb_001731_020 Hb_004920_060--Hb_001489_070 Hb_008725_130 Hb_008725_130 Hb_004920_060--Hb_008725_130 Hb_008246_030 Hb_008246_030 Hb_004920_060--Hb_008246_030 Hb_004376_030 Hb_004376_030 Hb_004920_060--Hb_004376_030 Hb_031069_020 Hb_031069_020 Hb_001731_020--Hb_031069_020 Hb_001731_020--Hb_001489_070 Hb_001731_020--Hb_078477_040 Hb_000261_290 Hb_000261_290 Hb_001731_020--Hb_000261_290 Hb_006588_050 Hb_006588_050 Hb_001731_020--Hb_006588_050 Hb_000997_410--Hb_001731_020 Hb_006615_100 Hb_006615_100 Hb_000997_410--Hb_006615_100 Hb_000997_410--Hb_000261_290 Hb_000997_410--Hb_006588_050 Hb_009620_030 Hb_009620_030 Hb_000997_410--Hb_009620_030 Hb_001489_070--Hb_078477_040 Hb_006002_030 Hb_006002_030 Hb_001489_070--Hb_006002_030 Hb_005462_020 Hb_005462_020 Hb_001489_070--Hb_005462_020 Hb_001489_070--Hb_008725_130 Hb_001946_240 Hb_001946_240 Hb_000116_460--Hb_001946_240 Hb_000281_010 Hb_000281_010 Hb_000116_460--Hb_000281_010 Hb_000116_460--Hb_004920_060 Hb_001473_080 Hb_001473_080 Hb_000116_460--Hb_001473_080 Hb_010883_080 Hb_010883_080 Hb_000116_460--Hb_010883_080 Hb_002675_040 Hb_002675_040 Hb_000116_460--Hb_002675_040 Hb_003529_130 Hb_003529_130 Hb_000021_020--Hb_003529_130 Hb_011609_170 Hb_011609_170 Hb_000021_020--Hb_011609_170 Hb_002307_350 Hb_002307_350 Hb_000021_020--Hb_002307_350 Hb_006915_020 Hb_006915_020 Hb_000021_020--Hb_006915_020 Hb_005408_020 Hb_005408_020 Hb_000021_020--Hb_005408_020 Hb_000021_020--Hb_008725_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.3259 1.6049 1.76995 1.49926 4.17577 3.52423
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.341947 0.269007 0.30229 1.17173 0.28042

CAGE analysis