Hb_114988_010

Information

Type -
Description -
Location Contig114988: 750-9461
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_114988_010 0.0 - - -
2 Hb_155720_010 0.2173446788 - - PREDICTED: uncharacterized protein LOC104115978 [Nicotiana tomentosiformis]
3 Hb_012146_040 0.2892031761 - - PREDICTED: amino-acid permease BAT1 homolog [Jatropha curcas]
4 Hb_040290_010 0.3106761144 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
5 Hb_004687_010 0.3142568998 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
6 Hb_011537_070 0.3229485511 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Vitis vinifera]
7 Hb_003725_050 0.3289761155 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
8 Hb_001172_080 0.334564041 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
9 Hb_002637_020 0.3464372163 - - -
10 Hb_000445_300 0.3472878735 - - PREDICTED: wall-associated receptor kinase 5-like [Eucalyptus grandis]
11 Hb_000109_030 0.3484780858 - - -
12 Hb_019617_010 0.3494329558 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
13 Hb_006054_050 0.3548213202 - - PREDICTED: uncharacterized protein LOC105649250, partial [Jatropha curcas]
14 Hb_056506_060 0.356521432 - - hypothetical protein B456_007G294000 [Gossypium raimondii]
15 Hb_176368_010 0.360529377 - - hypothetical protein POPTR_0019s00300g [Populus trichocarpa]
16 Hb_173121_010 0.3660191557 - - -
17 Hb_004128_120 0.36948997 - - hypothetical protein OsJ_10386 [Oryza sativa Japonica Group]
18 Hb_031658_040 0.3704395713 - - -
19 Hb_161709_010 0.3717554266 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
20 Hb_040153_010 0.3751401692 - - PREDICTED: DJ-1 protein homolog E-like [Jatropha curcas]

Gene co-expression network

sample Hb_114988_010 Hb_114988_010 Hb_155720_010 Hb_155720_010 Hb_114988_010--Hb_155720_010 Hb_012146_040 Hb_012146_040 Hb_114988_010--Hb_012146_040 Hb_040290_010 Hb_040290_010 Hb_114988_010--Hb_040290_010 Hb_004687_010 Hb_004687_010 Hb_114988_010--Hb_004687_010 Hb_011537_070 Hb_011537_070 Hb_114988_010--Hb_011537_070 Hb_003725_050 Hb_003725_050 Hb_114988_010--Hb_003725_050 Hb_019617_010 Hb_019617_010 Hb_155720_010--Hb_019617_010 Hb_003605_010 Hb_003605_010 Hb_155720_010--Hb_003605_010 Hb_173121_010 Hb_173121_010 Hb_155720_010--Hb_173121_010 Hb_067730_010 Hb_067730_010 Hb_155720_010--Hb_067730_010 Hb_155720_010--Hb_003725_050 Hb_035662_010 Hb_035662_010 Hb_012146_040--Hb_035662_010 Hb_000230_040 Hb_000230_040 Hb_012146_040--Hb_000230_040 Hb_000109_030 Hb_000109_030 Hb_012146_040--Hb_000109_030 Hb_009780_090 Hb_009780_090 Hb_012146_040--Hb_009780_090 Hb_002151_080 Hb_002151_080 Hb_012146_040--Hb_002151_080 Hb_080085_010 Hb_080085_010 Hb_040290_010--Hb_080085_010 Hb_001172_080 Hb_001172_080 Hb_040290_010--Hb_001172_080 Hb_011639_150 Hb_011639_150 Hb_040290_010--Hb_011639_150 Hb_161709_010 Hb_161709_010 Hb_040290_010--Hb_161709_010 Hb_001235_100 Hb_001235_100 Hb_040290_010--Hb_001235_100 Hb_093245_010 Hb_093245_010 Hb_040290_010--Hb_093245_010 Hb_000574_140 Hb_000574_140 Hb_004687_010--Hb_000574_140 Hb_004241_030 Hb_004241_030 Hb_004687_010--Hb_004241_030 Hb_001241_050 Hb_001241_050 Hb_004687_010--Hb_001241_050 Hb_006103_040 Hb_006103_040 Hb_004687_010--Hb_006103_040 Hb_008783_010 Hb_008783_010 Hb_004687_010--Hb_008783_010 Hb_105581_010 Hb_105581_010 Hb_004687_010--Hb_105581_010 Hb_000364_070 Hb_000364_070 Hb_011537_070--Hb_000364_070 Hb_000445_300 Hb_000445_300 Hb_011537_070--Hb_000445_300 Hb_176368_010 Hb_176368_010 Hb_011537_070--Hb_176368_010 Hb_000003_390 Hb_000003_390 Hb_011537_070--Hb_000003_390 Hb_002735_040 Hb_002735_040 Hb_011537_070--Hb_002735_040 Hb_059464_010 Hb_059464_010 Hb_011537_070--Hb_059464_010 Hb_007148_010 Hb_007148_010 Hb_003725_050--Hb_007148_010 Hb_176844_010 Hb_176844_010 Hb_003725_050--Hb_176844_010 Hb_010770_010 Hb_010770_010 Hb_003725_050--Hb_010770_010 Hb_006634_020 Hb_006634_020 Hb_003725_050--Hb_006634_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.257856 0.0791073 0 0 0.0468398 0.0725533
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0850428 0 0.10493 0.163316

CAGE analysis