Hb_115053_010

Information

Type -
Description -
Location Contig115053: 13-942
Sequence    

Annotation

kegg
ID cmo:103497647
description uncharacterized LOC103497647
nr
ID WP_042918419.1
description MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
swissprot
ID -
description -
trembl
ID A0A0B0MQD4
description Phosphate import ATP-binding PstB 2 OS=Gossypium arboreum GN=F383_30012 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_115053_010 0.0 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
2 Hb_010710_050 0.1973586504 - - -
3 Hb_000313_010 0.2147265081 - - polyprotein [Citrus endogenous pararetrovirus]
4 Hb_010449_040 0.2165467321 - - PREDICTED: probable CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2 [Jatropha curcas]
5 Hb_021888_130 0.2362313004 - - -
6 Hb_076175_010 0.2418056387 - - PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Cucumis melo]
7 Hb_001579_310 0.2418410366 - - PREDICTED: pentatricopeptide repeat-containing protein At2g37320 [Jatropha curcas]
8 Hb_000690_050 0.2486610401 - - -
9 Hb_009372_030 0.2509005204 - - 50S ribosomal protein L6, putative [Ricinus communis]
10 Hb_003680_190 0.2618671597 - - hypothetical protein POPTR_0006s11880g [Populus trichocarpa]
11 Hb_094744_010 0.2633264334 - - PREDICTED: disease resistance protein At4g27190-like [Populus euphratica]
12 Hb_008841_010 0.265303809 - - PREDICTED: uncharacterized protein LOC103323653 [Prunus mume]
13 Hb_002482_040 0.2672927247 - - PREDICTED: uncharacterized protein LOC105642409 [Jatropha curcas]
14 Hb_000297_040 0.2674553652 - - pre-mRNA cleavage factor im, 25kD subunit, putative [Ricinus communis]
15 Hb_075359_010 0.267604184 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
16 Hb_002539_090 0.2724437954 - - PREDICTED: uncharacterized protein LOC103489178 [Cucumis melo]
17 Hb_046703_010 0.2735567923 - - Leucine-rich repeat protein kinase family protein [Theobroma cacao]
18 Hb_001357_080 0.274941505 - - hypothetical protein POPTR_0005s15590g [Populus trichocarpa]
19 Hb_042710_010 0.2762723809 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
20 Hb_000174_040 0.2780846824 - - -

Gene co-expression network

sample Hb_115053_010 Hb_115053_010 Hb_010710_050 Hb_010710_050 Hb_115053_010--Hb_010710_050 Hb_000313_010 Hb_000313_010 Hb_115053_010--Hb_000313_010 Hb_010449_040 Hb_010449_040 Hb_115053_010--Hb_010449_040 Hb_021888_130 Hb_021888_130 Hb_115053_010--Hb_021888_130 Hb_076175_010 Hb_076175_010 Hb_115053_010--Hb_076175_010 Hb_001579_310 Hb_001579_310 Hb_115053_010--Hb_001579_310 Hb_010710_050--Hb_000313_010 Hb_010710_050--Hb_001579_310 Hb_008841_010 Hb_008841_010 Hb_010710_050--Hb_008841_010 Hb_001507_010 Hb_001507_010 Hb_010710_050--Hb_001507_010 Hb_013483_010 Hb_013483_010 Hb_010710_050--Hb_013483_010 Hb_001638_240 Hb_001638_240 Hb_000313_010--Hb_001638_240 Hb_001357_080 Hb_001357_080 Hb_000313_010--Hb_001357_080 Hb_002539_090 Hb_002539_090 Hb_000313_010--Hb_002539_090 Hb_000313_010--Hb_001579_310 Hb_000672_120 Hb_000672_120 Hb_000313_010--Hb_000672_120 Hb_007594_090 Hb_007594_090 Hb_000313_010--Hb_007594_090 Hb_009372_030 Hb_009372_030 Hb_010449_040--Hb_009372_030 Hb_010449_040--Hb_001638_240 Hb_000224_120 Hb_000224_120 Hb_010449_040--Hb_000224_120 Hb_007100_030 Hb_007100_030 Hb_010449_040--Hb_007100_030 Hb_029866_070 Hb_029866_070 Hb_010449_040--Hb_029866_070 Hb_005588_070 Hb_005588_070 Hb_010449_040--Hb_005588_070 Hb_049415_020 Hb_049415_020 Hb_021888_130--Hb_049415_020 Hb_000330_170 Hb_000330_170 Hb_021888_130--Hb_000330_170 Hb_002400_090 Hb_002400_090 Hb_021888_130--Hb_002400_090 Hb_008725_200 Hb_008725_200 Hb_021888_130--Hb_008725_200 Hb_033448_010 Hb_033448_010 Hb_021888_130--Hb_033448_010 Hb_000243_010 Hb_000243_010 Hb_021888_130--Hb_000243_010 Hb_076175_010--Hb_009372_030 Hb_001935_150 Hb_001935_150 Hb_076175_010--Hb_001935_150 Hb_030982_020 Hb_030982_020 Hb_076175_010--Hb_030982_020 Hb_002482_040 Hb_002482_040 Hb_076175_010--Hb_002482_040 Hb_002078_260 Hb_002078_260 Hb_076175_010--Hb_002078_260 Hb_076175_010--Hb_010449_040 Hb_001579_310--Hb_007594_090 Hb_003561_030 Hb_003561_030 Hb_001579_310--Hb_003561_030 Hb_002843_210 Hb_002843_210 Hb_001579_310--Hb_002843_210 Hb_001579_310--Hb_002539_090 Hb_012423_050 Hb_012423_050 Hb_001579_310--Hb_012423_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0955599 0.0554279 0.144098
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0656357 0.154832 0.187071 0.0417501 0

CAGE analysis