Hb_115107_010

Information

Type -
Description -
Location Contig115107: 3257-7485
Sequence    

Annotation

kegg
ID tcc:TCM_011633
description Early-responsive to dehydration stress protein (ERD4) isoform 1
nr
ID XP_007045993.1
description Early-responsive to dehydration stress protein (ERD4) isoform 1 [Theobroma cacao]
swissprot
ID Q8GUH7
description CSC1-like protein HYP1 OS=Arabidopsis thaliana GN=HYP1 PE=2 SV=1
trembl
ID A0A061E9Z2
description Early-responsive to dehydration stress protein (ERD4) isoform 1 OS=Theobroma cacao GN=TCM_011633 PE=4 SV=1
Gene Ontology
ID GO:0016020
description csc1-like protein at1g69450

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04561: 5940-7480
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_115107_010 0.0 - - Early-responsive to dehydration stress protein (ERD4) isoform 1 [Theobroma cacao]
2 Hb_002110_040 0.0801516327 - - hypothetical protein AMTR_s00135p00074190 [Amborella trichopoda]
3 Hb_009529_040 0.0982277066 - - PREDICTED: transmembrane protein 120 homolog isoform X1 [Malus domestica]
4 Hb_115477_010 0.1055109689 - - Protein dom-3, putative [Ricinus communis]
5 Hb_007026_040 0.1102767061 - - PREDICTED: chaperonin 60 subunit alpha 2, chloroplastic-like [Eucalyptus grandis]
6 Hb_001135_140 0.1178018319 - - PREDICTED: serine/threonine-protein kinase PBS1-like [Malus domestica]
7 Hb_168973_010 0.1260187941 - - -
8 Hb_004732_020 0.1294527165 - - PREDICTED: chitobiosyldiphosphodolichol beta-mannosyltransferase isoform X1 [Populus euphratica]
9 Hb_008096_030 0.1300161988 - - PREDICTED: uncharacterized protein LOC105638438 [Jatropha curcas]
10 Hb_003633_040 0.1312332433 - - hypothetical protein B456_008G146200 [Gossypium raimondii]
11 Hb_000109_170 0.1323893859 - - PREDICTED: uncharacterized protein LOC105649868 isoform X1 [Jatropha curcas]
12 Hb_003777_310 0.1329259581 - - conserved hypothetical protein [Ricinus communis]
13 Hb_005170_040 0.1355423635 - - PREDICTED: probable protein S-acyltransferase 7 [Jatropha curcas]
14 Hb_069738_010 0.138022397 - - PREDICTED: extra-large guanine nucleotide-binding protein 1 [Jatropha curcas]
15 Hb_038237_010 0.1389538382 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
16 Hb_002445_120 0.1403474923 - - secretory carrier membrane protein, putative [Ricinus communis]
17 Hb_076875_020 0.1414534595 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
18 Hb_010565_010 0.1415201068 - - PREDICTED: N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-like isoform X2 [Populus euphratica]
19 Hb_000608_320 0.1421388264 - - PREDICTED: uncharacterized protein LOC105644891 [Jatropha curcas]
20 Hb_148079_010 0.1424838396 - - PREDICTED: WD repeat-containing protein 82 [Jatropha curcas]

Gene co-expression network

sample Hb_115107_010 Hb_115107_010 Hb_002110_040 Hb_002110_040 Hb_115107_010--Hb_002110_040 Hb_009529_040 Hb_009529_040 Hb_115107_010--Hb_009529_040 Hb_115477_010 Hb_115477_010 Hb_115107_010--Hb_115477_010 Hb_007026_040 Hb_007026_040 Hb_115107_010--Hb_007026_040 Hb_001135_140 Hb_001135_140 Hb_115107_010--Hb_001135_140 Hb_168973_010 Hb_168973_010 Hb_115107_010--Hb_168973_010 Hb_002110_040--Hb_001135_140 Hb_003633_040 Hb_003633_040 Hb_002110_040--Hb_003633_040 Hb_000359_140 Hb_000359_140 Hb_002110_040--Hb_000359_140 Hb_000109_170 Hb_000109_170 Hb_002110_040--Hb_000109_170 Hb_002110_040--Hb_009529_040 Hb_000032_070 Hb_000032_070 Hb_009529_040--Hb_000032_070 Hb_001018_110 Hb_001018_110 Hb_009529_040--Hb_001018_110 Hb_002150_040 Hb_002150_040 Hb_009529_040--Hb_002150_040 Hb_002611_020 Hb_002611_020 Hb_009529_040--Hb_002611_020 Hb_187953_010 Hb_187953_010 Hb_009529_040--Hb_187953_010 Hb_115477_010--Hb_168973_010 Hb_006663_090 Hb_006663_090 Hb_115477_010--Hb_006663_090 Hb_115477_010--Hb_007026_040 Hb_001386_140 Hb_001386_140 Hb_115477_010--Hb_001386_140 Hb_010565_010 Hb_010565_010 Hb_115477_010--Hb_010565_010 Hb_162603_010 Hb_162603_010 Hb_007026_040--Hb_162603_010 Hb_103760_010 Hb_103760_010 Hb_007026_040--Hb_103760_010 Hb_000236_310 Hb_000236_310 Hb_007026_040--Hb_000236_310 Hb_002600_140 Hb_002600_140 Hb_007026_040--Hb_002600_140 Hb_032050_040 Hb_032050_040 Hb_007026_040--Hb_032050_040 Hb_000718_080 Hb_000718_080 Hb_007026_040--Hb_000718_080 Hb_005023_030 Hb_005023_030 Hb_001135_140--Hb_005023_030 Hb_001135_140--Hb_000359_140 Hb_002067_120 Hb_002067_120 Hb_001135_140--Hb_002067_120 Hb_001018_130 Hb_001018_130 Hb_001135_140--Hb_001018_130 Hb_008096_030 Hb_008096_030 Hb_168973_010--Hb_008096_030 Hb_168973_010--Hb_005023_030 Hb_007763_060 Hb_007763_060 Hb_168973_010--Hb_007763_060 Hb_000074_060 Hb_000074_060 Hb_168973_010--Hb_000074_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.38472 2.34554 1.06809 8.30467 4.13262 10.8657
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.06008 2.58268 4.61682 4.6614 2.38153

CAGE analysis