Hb_115158_010

Information

Type -
Description -
Location Contig115158: 1-1095
Sequence    

Annotation

kegg
ID pop:POPTR_0013s02830g
description hypothetical protein
nr
ID XP_006375780.1
description hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FWB6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s02830g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_115158_010 0.0 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
2 Hb_093177_010 0.1310474087 - - Phosphoprotein phosphatase [Theobroma cacao]
3 Hb_001608_030 0.1614885641 - - Protein NSP-INTERACTING KINASE 1 [Glycine soja]
4 Hb_007137_030 0.1615007852 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.3-like [Jatropha curcas]
5 Hb_012760_060 0.1621578787 - - PREDICTED: uncharacterized protein LOC105647085 isoform X1 [Jatropha curcas]
6 Hb_004106_010 0.1698526543 - - PREDICTED: protein GPR107 isoform X1 [Jatropha curcas]
7 Hb_000236_120 0.1796437778 - - -
8 Hb_158696_010 0.1914338102 - - PREDICTED: putative disease resistance protein RGA4, partial [Jatropha curcas]
9 Hb_002035_030 0.2005026188 - - hypothetical protein PRUPE_ppa003221mg [Prunus persica]
10 Hb_004032_250 0.2010638679 - - conserved hypothetical protein [Ricinus communis]
11 Hb_133508_010 0.2142416235 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.3-like [Jatropha curcas]
12 Hb_000336_190 0.2147642746 - - PREDICTED: UPF0481 protein At3g47200-like [Gossypium raimondii]
13 Hb_001408_150 0.21564065 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
14 Hb_004453_180 0.2188387363 - - hypothetical protein JCGZ_07188 [Jatropha curcas]
15 Hb_000659_020 0.2203686187 - - PREDICTED: putative L-type lectin-domain containing receptor kinase II.2 [Jatropha curcas]
16 Hb_004282_040 0.2205856795 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
17 Hb_000342_140 0.2214451982 - - PREDICTED: vacuolar-processing enzyme-like [Jatropha curcas]
18 Hb_098160_010 0.2220784324 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
19 Hb_000007_160 0.2222022015 - - hypothetical protein POPTR_0008s10970g [Populus trichocarpa]
20 Hb_005656_160 0.2224939156 - - PREDICTED: uncharacterized protein LOC105637448 [Jatropha curcas]

Gene co-expression network

sample Hb_115158_010 Hb_115158_010 Hb_093177_010 Hb_093177_010 Hb_115158_010--Hb_093177_010 Hb_001608_030 Hb_001608_030 Hb_115158_010--Hb_001608_030 Hb_007137_030 Hb_007137_030 Hb_115158_010--Hb_007137_030 Hb_012760_060 Hb_012760_060 Hb_115158_010--Hb_012760_060 Hb_004106_010 Hb_004106_010 Hb_115158_010--Hb_004106_010 Hb_000236_120 Hb_000236_120 Hb_115158_010--Hb_000236_120 Hb_093177_010--Hb_004106_010 Hb_158696_010 Hb_158696_010 Hb_093177_010--Hb_158696_010 Hb_093177_010--Hb_001608_030 Hb_093177_010--Hb_007137_030 Hb_001662_170 Hb_001662_170 Hb_093177_010--Hb_001662_170 Hb_001608_030--Hb_007137_030 Hb_001608_030--Hb_158696_010 Hb_010080_020 Hb_010080_020 Hb_001608_030--Hb_010080_020 Hb_000007_160 Hb_000007_160 Hb_001608_030--Hb_000007_160 Hb_000984_100 Hb_000984_100 Hb_001608_030--Hb_000984_100 Hb_042553_010 Hb_042553_010 Hb_007137_030--Hb_042553_010 Hb_133508_010 Hb_133508_010 Hb_007137_030--Hb_133508_010 Hb_102100_010 Hb_102100_010 Hb_007137_030--Hb_102100_010 Hb_000506_130 Hb_000506_130 Hb_012760_060--Hb_000506_130 Hb_052113_020 Hb_052113_020 Hb_012760_060--Hb_052113_020 Hb_000431_030 Hb_000431_030 Hb_012760_060--Hb_000431_030 Hb_017434_020 Hb_017434_020 Hb_012760_060--Hb_017434_020 Hb_024357_010 Hb_024357_010 Hb_012760_060--Hb_024357_010 Hb_004106_010--Hb_001662_170 Hb_004106_010--Hb_158696_010 Hb_012787_040 Hb_012787_040 Hb_004106_010--Hb_012787_040 Hb_001053_200 Hb_001053_200 Hb_004106_010--Hb_001053_200 Hb_008103_100 Hb_008103_100 Hb_004106_010--Hb_008103_100 Hb_001699_050 Hb_001699_050 Hb_000236_120--Hb_001699_050 Hb_003602_090 Hb_003602_090 Hb_000236_120--Hb_003602_090 Hb_004032_250 Hb_004032_250 Hb_000236_120--Hb_004032_250 Hb_019040_010 Hb_019040_010 Hb_000236_120--Hb_019040_010 Hb_002739_070 Hb_002739_070 Hb_000236_120--Hb_002739_070 Hb_017604_020 Hb_017604_020 Hb_000236_120--Hb_017604_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.414666 4.66886 0.721193 2.65696 0.906184 0.111852
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.23804 0.872235 0.440765

CAGE analysis