Hb_115578_010

Information

Type -
Description -
Location Contig115578: 317-925
Sequence    

Annotation

kegg
ID pop:POPTR_0006s07950g
description POPTRDRAFT_831873; prefoldin-related KE2 family protein
nr
ID XP_011019945.1
description PREDICTED: prefoldin subunit 1-like [Populus euphratica]
swissprot
ID -
description -
trembl
ID A9PA16
description Prefoldin-related KE2 family protein OS=Populus trichocarpa GN=POPTR_0006s07950g PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04688: 536-899
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_115578_010 0.0 - - PREDICTED: prefoldin subunit 1-like [Populus euphratica]
2 Hb_000295_090 0.1565610238 - - Clathrin light chain 2 [Glycine soja]
3 Hb_001385_090 0.1648556145 - - PREDICTED: uncharacterized protein LOC105644404 isoform X2 [Jatropha curcas]
4 Hb_134310_020 0.1727217432 - - PREDICTED: putative cytochrome c oxidase subunit 5C-4-like [Citrus sinensis]
5 Hb_002249_110 0.1874886245 - - PREDICTED: centromere protein S isoform X1 [Jatropha curcas]
6 Hb_130134_020 0.2028316603 - - -
7 Hb_000059_090 0.2086051768 - - -
8 Hb_011794_020 0.211507153 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_130134_030 0.230103418 transcription factor TF Family: C3H hypothetical protein JCGZ_14472 [Jatropha curcas]
10 Hb_088774_010 0.2384320227 - - -
11 Hb_027295_040 0.2401850445 - - hypothetical protein MIMGU_mgv1a017500mg [Erythranthe guttata]
12 Hb_000004_140 0.2450254235 - - -
13 Hb_005933_010 0.2491133498 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
14 Hb_001722_020 0.2521640922 - - -
15 Hb_077211_010 0.2524529734 - - PREDICTED: lariat debranching enzyme-like [Jatropha curcas]
16 Hb_015930_010 0.253976228 - - uncharacterized protein LOC100499930 [Glycine max]
17 Hb_001668_030 0.2559733923 - - conserved hypothetical protein [Ricinus communis]
18 Hb_070385_010 0.2598727281 - - PREDICTED: uncharacterized protein LOC103323653 [Prunus mume]
19 Hb_000617_170 0.2599053554 - - -
20 Hb_124587_010 0.2599358629 - - PREDICTED: importin-5-like [Musa acuminata subsp. malaccensis]

Gene co-expression network

sample Hb_115578_010 Hb_115578_010 Hb_000295_090 Hb_000295_090 Hb_115578_010--Hb_000295_090 Hb_001385_090 Hb_001385_090 Hb_115578_010--Hb_001385_090 Hb_134310_020 Hb_134310_020 Hb_115578_010--Hb_134310_020 Hb_002249_110 Hb_002249_110 Hb_115578_010--Hb_002249_110 Hb_130134_020 Hb_130134_020 Hb_115578_010--Hb_130134_020 Hb_000059_090 Hb_000059_090 Hb_115578_010--Hb_000059_090 Hb_000295_090--Hb_002249_110 Hb_000295_090--Hb_130134_020 Hb_088774_010 Hb_088774_010 Hb_000295_090--Hb_088774_010 Hb_000295_090--Hb_001385_090 Hb_000523_100 Hb_000523_100 Hb_000295_090--Hb_000523_100 Hb_001418_060 Hb_001418_060 Hb_001385_090--Hb_001418_060 Hb_001385_090--Hb_002249_110 Hb_001385_090--Hb_000523_100 Hb_001385_090--Hb_130134_020 Hb_134310_020--Hb_130134_020 Hb_000617_170 Hb_000617_170 Hb_134310_020--Hb_000617_170 Hb_000200_040 Hb_000200_040 Hb_134310_020--Hb_000200_040 Hb_134310_020--Hb_000295_090 Hb_000976_030 Hb_000976_030 Hb_134310_020--Hb_000976_030 Hb_071923_010 Hb_071923_010 Hb_002249_110--Hb_071923_010 Hb_070385_010 Hb_070385_010 Hb_002249_110--Hb_070385_010 Hb_003297_020 Hb_003297_020 Hb_002249_110--Hb_003297_020 Hb_130134_030 Hb_130134_030 Hb_130134_020--Hb_130134_030 Hb_178041_010 Hb_178041_010 Hb_130134_020--Hb_178041_010 Hb_003376_070 Hb_003376_070 Hb_130134_020--Hb_003376_070 Hb_088428_010 Hb_088428_010 Hb_130134_020--Hb_088428_010 Hb_000059_090--Hb_000295_090 Hb_056531_040 Hb_056531_040 Hb_000059_090--Hb_056531_040 Hb_000707_070 Hb_000707_070 Hb_000059_090--Hb_000707_070 Hb_001235_060 Hb_001235_060 Hb_000059_090--Hb_001235_060 Hb_086287_020 Hb_086287_020 Hb_000059_090--Hb_086287_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.3852 4.28767 0.771247 7.55046 22.7338 91.8014
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.36532 1.60891 1.67878 0.544263 0

CAGE analysis