Hb_115784_010

Information

Type -
Description -
Location Contig115784: 2789-3943
Sequence    

Annotation

kegg
ID vvi:104877935
description uncharacterized LOC104877935
nr
ID XP_009778385.1
description PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID M5WQG1
description Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa023432mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_115784_010 0.0 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
2 Hb_070820_010 0.2612165833 - - hypothetical protein B456_008G232800 [Gossypium raimondii]
3 Hb_000086_330 0.2697137413 - - PREDICTED: glutathione gamma-glutamylcysteinyltransferase 1 [Jatropha curcas]
4 Hb_141383_010 0.2730925336 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
5 Hb_002301_240 0.2794911286 - - auxin-repressed protein-like protein ARP1 [Manihot esculenta]
6 Hb_000931_030 0.2944073423 - - PREDICTED: uncharacterized protein LOC105130278 [Populus euphratica]
7 Hb_004732_010 0.2966506738 - - -
8 Hb_114839_010 0.3013838283 - - -
9 Hb_102465_010 0.3160906103 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
10 Hb_011401_010 0.3176525085 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
11 Hb_002231_050 0.3232770846 - - -
12 Hb_056196_070 0.3280325614 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA26-like [Jatropha curcas]
13 Hb_001722_030 0.3328907838 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105123768 isoform X2 [Populus euphratica]
14 Hb_002205_200 0.3347005291 - - PREDICTED: uncharacterized protein LOC105649174 [Jatropha curcas]
15 Hb_000189_360 0.334922075 - - Calcium-transporting ATPase 12, plasma membrane-type [Morus notabilis]
16 Hb_000713_020 0.3417050996 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
17 Hb_010128_110 0.3513700721 - - PREDICTED: uncharacterized protein LOC105632071 [Jatropha curcas]
18 Hb_019033_010 0.352786177 - - PREDICTED: uncharacterized protein LOC105643397 [Jatropha curcas]
19 Hb_001047_140 0.3533684863 - - -
20 Hb_004586_450 0.3556478716 - - -

Gene co-expression network

sample Hb_115784_010 Hb_115784_010 Hb_070820_010 Hb_070820_010 Hb_115784_010--Hb_070820_010 Hb_000086_330 Hb_000086_330 Hb_115784_010--Hb_000086_330 Hb_141383_010 Hb_141383_010 Hb_115784_010--Hb_141383_010 Hb_002301_240 Hb_002301_240 Hb_115784_010--Hb_002301_240 Hb_000931_030 Hb_000931_030 Hb_115784_010--Hb_000931_030 Hb_004732_010 Hb_004732_010 Hb_115784_010--Hb_004732_010 Hb_070820_010--Hb_000086_330 Hb_002821_010 Hb_002821_010 Hb_070820_010--Hb_002821_010 Hb_004098_030 Hb_004098_030 Hb_070820_010--Hb_004098_030 Hb_042404_010 Hb_042404_010 Hb_070820_010--Hb_042404_010 Hb_003398_060 Hb_003398_060 Hb_070820_010--Hb_003398_060 Hb_048197_010 Hb_048197_010 Hb_070820_010--Hb_048197_010 Hb_000445_330 Hb_000445_330 Hb_000086_330--Hb_000445_330 Hb_000086_330--Hb_002301_240 Hb_001047_140 Hb_001047_140 Hb_000086_330--Hb_001047_140 Hb_004502_080 Hb_004502_080 Hb_000086_330--Hb_004502_080 Hb_030765_010 Hb_030765_010 Hb_000086_330--Hb_030765_010 Hb_141383_010--Hb_000931_030 Hb_114839_010 Hb_114839_010 Hb_141383_010--Hb_114839_010 Hb_141383_010--Hb_004732_010 Hb_007451_060 Hb_007451_060 Hb_141383_010--Hb_007451_060 Hb_035746_010 Hb_035746_010 Hb_141383_010--Hb_035746_010 Hb_019033_010 Hb_019033_010 Hb_002301_240--Hb_019033_010 Hb_025246_010 Hb_025246_010 Hb_002301_240--Hb_025246_010 Hb_056196_070 Hb_056196_070 Hb_002301_240--Hb_056196_070 Hb_002835_220 Hb_002835_220 Hb_002301_240--Hb_002835_220 Hb_002301_240--Hb_070820_010 Hb_000025_100 Hb_000025_100 Hb_000931_030--Hb_000025_100 Hb_000931_030--Hb_114839_010 Hb_001544_020 Hb_001544_020 Hb_000931_030--Hb_001544_020 Hb_171529_010 Hb_171529_010 Hb_000931_030--Hb_171529_010 Hb_126112_010 Hb_126112_010 Hb_000931_030--Hb_126112_010 Hb_000829_080 Hb_000829_080 Hb_004732_010--Hb_000829_080 Hb_010288_040 Hb_010288_040 Hb_004732_010--Hb_010288_040 Hb_004732_010--Hb_007451_060 Hb_000189_360 Hb_000189_360 Hb_004732_010--Hb_000189_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.099956 0.0555339 0 0 0 0.15693
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.305197 0.040006 0 0.0321788 0

CAGE analysis