Hb_115791_020

Information

Type -
Description -
Location Contig115791: 17679-24811
Sequence    

Annotation

kegg
ID pda:103713573
description uncharacterized LOC103713573
nr
ID XP_009612366.1
description PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
swissprot
ID P92523
description Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana GN=AtMg00860 PE=4 SV=1
trembl
ID Q6F2D6
description Putative polyprotein, identical OS=Solanum demissum GN=SDM1_49t00014 PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_115791_020 0.0 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
2 Hb_075807_010 0.2380892183 - - PREDICTED: uncharacterized protein LOC105631775 [Jatropha curcas]
3 Hb_005048_020 0.2593554485 - - Retrotransposon protein, putative [Theobroma cacao]
4 Hb_001387_030 0.2640003591 transcription factor TF Family: ERF hypothetical protein POPTR_0013s13920g [Populus trichocarpa]
5 Hb_004734_010 0.2678994511 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]
6 Hb_002918_180 0.2704236808 - - hypothetical protein POPTR_0004s04740g [Populus trichocarpa]
7 Hb_055101_010 0.2785697439 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
8 Hb_000024_010 0.2872118602 - - Uncharacterized protein TCM_044274 [Theobroma cacao]
9 Hb_022250_090 0.2949771175 - - PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Jatropha curcas]
10 Hb_004690_040 0.2971267405 - - PREDICTED: pentatricopeptide repeat-containing protein At1g71420 [Jatropha curcas]
11 Hb_008511_010 0.2975261863 - - PREDICTED: putative proline-rich receptor-like protein kinase PERK6 [Jatropha curcas]
12 Hb_002241_030 0.2993557715 - - Retrotransposon protein, putative [Theobroma cacao]
13 Hb_000189_140 0.2996847481 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_000025_520 0.3022646834 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27110 [Jatropha curcas]
15 Hb_005439_040 0.3025626352 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
16 Hb_000500_140 0.3058875342 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 4 [Jatropha curcas]
17 Hb_004200_020 0.3065022063 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
18 Hb_000154_010 0.3078214465 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_007042_010 0.3092985788 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
20 Hb_001053_090 0.3094132571 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 30-like [Jatropha curcas]

Gene co-expression network

sample Hb_115791_020 Hb_115791_020 Hb_075807_010 Hb_075807_010 Hb_115791_020--Hb_075807_010 Hb_005048_020 Hb_005048_020 Hb_115791_020--Hb_005048_020 Hb_001387_030 Hb_001387_030 Hb_115791_020--Hb_001387_030 Hb_004734_010 Hb_004734_010 Hb_115791_020--Hb_004734_010 Hb_002918_180 Hb_002918_180 Hb_115791_020--Hb_002918_180 Hb_055101_010 Hb_055101_010 Hb_115791_020--Hb_055101_010 Hb_075807_010--Hb_001387_030 Hb_020301_030 Hb_020301_030 Hb_075807_010--Hb_020301_030 Hb_025557_030 Hb_025557_030 Hb_075807_010--Hb_025557_030 Hb_027393_030 Hb_027393_030 Hb_075807_010--Hb_027393_030 Hb_002007_190 Hb_002007_190 Hb_075807_010--Hb_002007_190 Hb_001189_050 Hb_001189_050 Hb_075807_010--Hb_001189_050 Hb_005048_020--Hb_002918_180 Hb_001473_040 Hb_001473_040 Hb_005048_020--Hb_001473_040 Hb_000538_030 Hb_000538_030 Hb_005048_020--Hb_000538_030 Hb_000258_380 Hb_000258_380 Hb_005048_020--Hb_000258_380 Hb_004200_020 Hb_004200_020 Hb_005048_020--Hb_004200_020 Hb_001621_070 Hb_001621_070 Hb_005048_020--Hb_001621_070 Hb_005408_050 Hb_005408_050 Hb_001387_030--Hb_005408_050 Hb_001387_030--Hb_055101_010 Hb_001387_030--Hb_004200_020 Hb_000990_060 Hb_000990_060 Hb_001387_030--Hb_000990_060 Hb_000300_150 Hb_000300_150 Hb_004734_010--Hb_000300_150 Hb_000189_140 Hb_000189_140 Hb_004734_010--Hb_000189_140 Hb_003656_060 Hb_003656_060 Hb_004734_010--Hb_003656_060 Hb_001373_180 Hb_001373_180 Hb_004734_010--Hb_001373_180 Hb_004734_010--Hb_001473_040 Hb_001511_070 Hb_001511_070 Hb_004734_010--Hb_001511_070 Hb_002235_040 Hb_002235_040 Hb_002918_180--Hb_002235_040 Hb_002316_150 Hb_002316_150 Hb_002918_180--Hb_002316_150 Hb_000866_120 Hb_000866_120 Hb_002918_180--Hb_000866_120 Hb_029142_050 Hb_029142_050 Hb_002918_180--Hb_029142_050 Hb_001999_090 Hb_001999_090 Hb_002918_180--Hb_001999_090 Hb_022250_090 Hb_022250_090 Hb_002918_180--Hb_022250_090 Hb_004785_140 Hb_004785_140 Hb_055101_010--Hb_004785_140 Hb_055101_010--Hb_000990_060 Hb_002205_190 Hb_002205_190 Hb_055101_010--Hb_002205_190 Hb_080952_010 Hb_080952_010 Hb_055101_010--Hb_080952_010 Hb_000362_120 Hb_000362_120 Hb_055101_010--Hb_000362_120 Hb_002496_040 Hb_002496_040 Hb_055101_010--Hb_002496_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0208588 0.044467 0 0 0 0.0157322
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0136133 0.0107128 0.0410251 0.0127426 0.022881

CAGE analysis