Hb_116091_010

Information

Type transcription factor
Description TF Family: bZIP
Location Contig116091: 54-416
Sequence    

Annotation

kegg
ID pop:POPTR_0007s13380g
description POPTRDRAFT_719591; hypothetical protein
nr
ID XP_002310269.2
description hypothetical protein POPTR_0007s13380g [Populus trichocarpa]
swissprot
ID P24068
description Ocs element-binding factor 1 OS=Zea mays GN=OBF1 PE=2 SV=2
trembl
ID B9HF95
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s13380g PE=4 SV=2
Gene Ontology
ID GO:0003700
description ocs element-binding factor 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_116091_010 0.0 transcription factor TF Family: bZIP hypothetical protein POPTR_0007s13380g [Populus trichocarpa]
2 Hb_002874_160 0.1217443389 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000504_100 0.1424886675 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000714_070 0.1492998477 transcription factor TF Family: LOB hypothetical protein JCGZ_14754 [Jatropha curcas]
5 Hb_000120_600 0.150614075 - - PREDICTED: uncharacterized protein LOC105628582 [Jatropha curcas]
6 Hb_023768_010 0.1552972326 - - -
7 Hb_188281_010 0.1599171528 - - carboxylic ester hydrolase, putative [Ricinus communis]
8 Hb_001856_130 0.1634299817 - - hypothetical protein CISIN_1g022795mg [Citrus sinensis]
9 Hb_001677_190 0.1637798054 - - ATP-binding cassette transporter, putative [Ricinus communis]
10 Hb_002783_210 0.1722403462 - - PREDICTED: uncharacterized protein LOC105635341 [Jatropha curcas]
11 Hb_000120_560 0.1724753636 - - protein with unknown function [Ricinus communis]
12 Hb_002640_030 0.1737430189 - - hypothetical protein POPTR_0014s05270g [Populus trichocarpa]
13 Hb_017549_010 0.1742403108 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_00222 [Jatropha curcas]
14 Hb_001675_290 0.1749841741 - - PREDICTED: transcription factor bHLH68-like isoform X1 [Jatropha curcas]
15 Hb_001953_010 0.1756114846 - - PREDICTED: bidirectional sugar transporter SWEET10-like [Jatropha curcas]
16 Hb_002320_050 0.1773291791 - - clathrin assembly family protein [Populus trichocarpa]
17 Hb_000983_110 0.1784911768 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
18 Hb_001675_260 0.1791046484 - - nitrate transporter, putative [Ricinus communis]
19 Hb_004157_060 0.1798286908 - - PREDICTED: xyloglucan endotransglucosylase/hydrolase protein 22-like [Jatropha curcas]
20 Hb_049915_010 0.1810583806 - - PREDICTED: uncharacterized serine-rich protein C215.13 [Jatropha curcas]

Gene co-expression network

sample Hb_116091_010 Hb_116091_010 Hb_002874_160 Hb_002874_160 Hb_116091_010--Hb_002874_160 Hb_000504_100 Hb_000504_100 Hb_116091_010--Hb_000504_100 Hb_000714_070 Hb_000714_070 Hb_116091_010--Hb_000714_070 Hb_000120_600 Hb_000120_600 Hb_116091_010--Hb_000120_600 Hb_023768_010 Hb_023768_010 Hb_116091_010--Hb_023768_010 Hb_188281_010 Hb_188281_010 Hb_116091_010--Hb_188281_010 Hb_002874_160--Hb_023768_010 Hb_002053_020 Hb_002053_020 Hb_002874_160--Hb_002053_020 Hb_002874_160--Hb_000120_600 Hb_001766_140 Hb_001766_140 Hb_002874_160--Hb_001766_140 Hb_002783_210 Hb_002783_210 Hb_002874_160--Hb_002783_210 Hb_001856_130 Hb_001856_130 Hb_000504_100--Hb_001856_130 Hb_000504_100--Hb_000714_070 Hb_017549_010 Hb_017549_010 Hb_000504_100--Hb_017549_010 Hb_000504_100--Hb_000120_600 Hb_030827_080 Hb_030827_080 Hb_000504_100--Hb_030827_080 Hb_015884_010 Hb_015884_010 Hb_000714_070--Hb_015884_010 Hb_010642_010 Hb_010642_010 Hb_000714_070--Hb_010642_010 Hb_000714_070--Hb_030827_080 Hb_153180_010 Hb_153180_010 Hb_000714_070--Hb_153180_010 Hb_000714_070--Hb_001856_130 Hb_000714_070--Hb_000120_600 Hb_000120_600--Hb_001856_130 Hb_002804_070 Hb_002804_070 Hb_000120_600--Hb_002804_070 Hb_001953_010 Hb_001953_010 Hb_000120_600--Hb_001953_010 Hb_000120_600--Hb_017549_010 Hb_004374_170 Hb_004374_170 Hb_000120_600--Hb_004374_170 Hb_004474_070 Hb_004474_070 Hb_000120_600--Hb_004474_070 Hb_023768_010--Hb_002053_020 Hb_025194_070 Hb_025194_070 Hb_023768_010--Hb_025194_070 Hb_002640_030 Hb_002640_030 Hb_023768_010--Hb_002640_030 Hb_001810_040 Hb_001810_040 Hb_023768_010--Hb_001810_040 Hb_000922_050 Hb_000922_050 Hb_023768_010--Hb_000922_050 Hb_003427_070 Hb_003427_070 Hb_023768_010--Hb_003427_070 Hb_002893_030 Hb_002893_030 Hb_188281_010--Hb_002893_030 Hb_000260_110 Hb_000260_110 Hb_188281_010--Hb_000260_110 Hb_007163_050 Hb_007163_050 Hb_188281_010--Hb_007163_050 Hb_000365_280 Hb_000365_280 Hb_188281_010--Hb_000365_280 Hb_000742_290 Hb_000742_290 Hb_188281_010--Hb_000742_290 Hb_001675_290 Hb_001675_290 Hb_188281_010--Hb_001675_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.3762 1.92309 9.17415 0 0.18696
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.241967 0 0.294351 0.250075 0.644585

CAGE analysis