Hb_116103_010

Information

Type transcription factor
Description TF Family: ERF
Location Contig116103: 1256-2552
Sequence    

Annotation

kegg
ID rcu:RCOM_0273420
description Ethylene-responsive transcription factor, putative
nr
ID XP_012070058.1
description PREDICTED: ethylene-responsive transcription factor 5-like [Jatropha curcas]
swissprot
ID Q8VZ91
description Ethylene-responsive transcription factor 6 OS=Arabidopsis thaliana GN=ERF6 PE=2 SV=2
trembl
ID A0A067L5Z5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03451 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ethylene-responsive transcription factor 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04978: 1530-1628 , PASA_asmbl_04979: 2321-2618
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_116103_010 0.0 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 5-like [Jatropha curcas]
2 Hb_000904_110 0.0330143582 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF109-like [Eucalyptus grandis]
3 Hb_064885_010 0.0671403417 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
4 Hb_002849_010 0.083659673 - - PREDICTED: putative UPF0481 protein At3g02645 [Jatropha curcas]
5 Hb_004924_020 0.0879428471 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_173029_010 0.0906072779 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_000668_220 0.1029279415 - - PREDICTED: uncharacterized protein LOC105119281 [Populus euphratica]
8 Hb_011028_040 0.1048957684 - - receptor serine/threonine kinase, putative [Ricinus communis]
9 Hb_000628_050 0.1097012908 - - nucleic acid binding protein, putative [Ricinus communis]
10 Hb_001002_020 0.1138105095 - - ATP binding protein, putative [Ricinus communis]
11 Hb_005928_010 0.114174919 - - PREDICTED: phospholipase A1-Igamma1, chloroplastic-like [Jatropha curcas]
12 Hb_000665_090 0.1153223201 - - conserved hypothetical protein [Ricinus communis]
13 Hb_054165_010 0.1157814886 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
14 Hb_004241_190 0.1159113622 - - -
15 Hb_004314_020 0.1200161705 - - Auxin-responsive GH3 family protein [Theobroma cacao]
16 Hb_000714_080 0.1215383115 transcription factor TF Family: Trihelix GT-2 factor [Glycine max]
17 Hb_002066_050 0.1226290632 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF109-like [Jatropha curcas]
18 Hb_008963_010 0.1240935524 desease resistance Gene Name: LRR_4 PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
19 Hb_007546_010 0.1244186999 - - unnamed protein product [Vitis vinifera]
20 Hb_091826_020 0.1257951478 - - hypothetical protein JCGZ_04975 [Jatropha curcas]

Gene co-expression network

sample Hb_116103_010 Hb_116103_010 Hb_000904_110 Hb_000904_110 Hb_116103_010--Hb_000904_110 Hb_064885_010 Hb_064885_010 Hb_116103_010--Hb_064885_010 Hb_002849_010 Hb_002849_010 Hb_116103_010--Hb_002849_010 Hb_004924_020 Hb_004924_020 Hb_116103_010--Hb_004924_020 Hb_173029_010 Hb_173029_010 Hb_116103_010--Hb_173029_010 Hb_000668_220 Hb_000668_220 Hb_116103_010--Hb_000668_220 Hb_000904_110--Hb_064885_010 Hb_000904_110--Hb_173029_010 Hb_000904_110--Hb_004924_020 Hb_000904_110--Hb_002849_010 Hb_000904_110--Hb_000668_220 Hb_001002_020 Hb_001002_020 Hb_064885_010--Hb_001002_020 Hb_005928_010 Hb_005928_010 Hb_064885_010--Hb_005928_010 Hb_054165_010 Hb_054165_010 Hb_064885_010--Hb_054165_010 Hb_000277_030 Hb_000277_030 Hb_064885_010--Hb_000277_030 Hb_004314_020 Hb_004314_020 Hb_002849_010--Hb_004314_020 Hb_011028_040 Hb_011028_040 Hb_002849_010--Hb_011028_040 Hb_002849_010--Hb_064885_010 Hb_000628_050 Hb_000628_050 Hb_002849_010--Hb_000628_050 Hb_008963_010 Hb_008963_010 Hb_004924_020--Hb_008963_010 Hb_004924_020--Hb_173029_010 Hb_004924_020--Hb_000668_220 Hb_091826_020 Hb_091826_020 Hb_004924_020--Hb_091826_020 Hb_173029_010--Hb_000668_220 Hb_004241_190 Hb_004241_190 Hb_173029_010--Hb_004241_190 Hb_173029_010--Hb_000628_050 Hb_000373_220 Hb_000373_220 Hb_173029_010--Hb_000373_220 Hb_053935_010 Hb_053935_010 Hb_173029_010--Hb_053935_010 Hb_000668_220--Hb_004241_190 Hb_000668_220--Hb_000373_220 Hb_000668_220--Hb_053935_010 Hb_001511_200 Hb_001511_200 Hb_000668_220--Hb_001511_200 Hb_000668_220--Hb_000628_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 85.5628 86.732 81.7839 0.0190514 0.0606598
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.173713 0.37576 0 0.287681 3.02995

CAGE analysis