Hb_116125_010

Information

Type -
Description -
Location Contig116125: 316-933
Sequence    

Annotation

kegg
ID cit:102619488
description probable leucine-rich repeat receptor-like protein kinase At1g35710-like
nr
ID XP_006495266.1
description PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710-like [Citrus sinensis]
swissprot
ID Q8K377
description Leucine-rich repeat transmembrane neuronal protein 1 OS=Mus musculus GN=Lrrtm1 PE=2 SV=1
trembl
ID A0A067D727
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0355121mg PE=4 SV=1
Gene Ontology
ID GO:0016020
description systemin receptor sr160-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_116125_010 0.0 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710-like [Citrus sinensis]
2 Hb_018344_010 0.1950563978 - - PREDICTED: endochitinase 2-like [Populus euphratica]
3 Hb_000270_210 0.2120026725 - - PREDICTED: transcription initiation factor IIB-2-like [Jatropha curcas]
4 Hb_002259_040 0.245942886 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_105085_010 0.2472481287 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
6 Hb_002232_150 0.2569659013 - - PREDICTED: squalene monooxygenase-like [Jatropha curcas]
7 Hb_005389_110 0.257954913 - - PREDICTED: uncharacterized protein LOC105637756 [Jatropha curcas]
8 Hb_002735_040 0.2598863982 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
9 Hb_000364_070 0.2659238183 transcription factor TF Family: AP2 PREDICTED: floral homeotic protein APETALA 2 isoform X1 [Jatropha curcas]
10 Hb_000640_150 0.2741882699 transcription factor TF Family: WRKY conserved hypothetical protein [Ricinus communis]
11 Hb_000295_010 0.2789721752 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
12 Hb_003534_040 0.2795720196 - - hypothetical protein POPTR_0009s14420g [Populus trichocarpa]
13 Hb_000733_040 0.2970837223 - - hypothetical protein POPTR_0010s20310g [Populus trichocarpa]
14 Hb_006810_070 0.2991075915 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
15 Hb_000445_300 0.3021266 - - PREDICTED: wall-associated receptor kinase 5-like [Eucalyptus grandis]
16 Hb_003238_030 0.3031268822 - - hypothetical protein EUGRSUZ_I00356 [Eucalyptus grandis]
17 Hb_010531_050 0.3038675786 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
18 Hb_011537_070 0.3057192933 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Vitis vinifera]
19 Hb_000101_210 0.3061060206 - - PREDICTED: uncharacterized protein LOC105646445 [Jatropha curcas]
20 Hb_023647_040 0.3062061199 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]

Gene co-expression network

sample Hb_116125_010 Hb_116125_010 Hb_018344_010 Hb_018344_010 Hb_116125_010--Hb_018344_010 Hb_000270_210 Hb_000270_210 Hb_116125_010--Hb_000270_210 Hb_002259_040 Hb_002259_040 Hb_116125_010--Hb_002259_040 Hb_105085_010 Hb_105085_010 Hb_116125_010--Hb_105085_010 Hb_002232_150 Hb_002232_150 Hb_116125_010--Hb_002232_150 Hb_005389_110 Hb_005389_110 Hb_116125_010--Hb_005389_110 Hb_018344_010--Hb_005389_110 Hb_003534_040 Hb_003534_040 Hb_018344_010--Hb_003534_040 Hb_018344_010--Hb_000270_210 Hb_018344_010--Hb_105085_010 Hb_001632_010 Hb_001632_010 Hb_018344_010--Hb_001632_010 Hb_000270_210--Hb_005389_110 Hb_000640_150 Hb_000640_150 Hb_000270_210--Hb_000640_150 Hb_000270_210--Hb_002232_150 Hb_002735_040 Hb_002735_040 Hb_000270_210--Hb_002735_040 Hb_000189_230 Hb_000189_230 Hb_002259_040--Hb_000189_230 Hb_002259_040--Hb_002735_040 Hb_002259_040--Hb_105085_010 Hb_000608_060 Hb_000608_060 Hb_002259_040--Hb_000608_060 Hb_002259_040--Hb_000270_210 Hb_002804_050 Hb_002804_050 Hb_105085_010--Hb_002804_050 Hb_105085_010--Hb_002735_040 Hb_005122_060 Hb_005122_060 Hb_105085_010--Hb_005122_060 Hb_002843_050 Hb_002843_050 Hb_105085_010--Hb_002843_050 Hb_006615_100 Hb_006615_100 Hb_105085_010--Hb_006615_100 Hb_011344_170 Hb_011344_170 Hb_105085_010--Hb_011344_170 Hb_007846_040 Hb_007846_040 Hb_002232_150--Hb_007846_040 Hb_010531_050 Hb_010531_050 Hb_002232_150--Hb_010531_050 Hb_002232_150--Hb_000640_150 Hb_005464_030 Hb_005464_030 Hb_002232_150--Hb_005464_030 Hb_164458_010 Hb_164458_010 Hb_002232_150--Hb_164458_010 Hb_003929_060 Hb_003929_060 Hb_005389_110--Hb_003929_060 Hb_000402_010 Hb_000402_010 Hb_005389_110--Hb_000402_010 Hb_005389_110--Hb_002735_040 Hb_005389_110--Hb_000640_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.250892 0.0942698 0.0451341 0 0.110992 0.0986411
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.125826 0

CAGE analysis