Hb_116190_010

Information

Type -
Description -
Location Contig116190: 304-813
Sequence    

Annotation

kegg
ID rcu:RCOM_1076800
description hypothetical protein
nr
ID XP_011014818.1
description PREDICTED: uncharacterized protein LOC105118535 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9RM10
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1076800 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_116190_010 0.0 - - PREDICTED: uncharacterized protein LOC105118535 [Populus euphratica]
2 Hb_000373_060 0.0497919889 - - PREDICTED: extensin-3 [Camelina sativa]
3 Hb_003861_090 0.0578603454 - - adenylsulfate kinase, putative [Ricinus communis]
4 Hb_006499_020 0.083968087 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
5 Hb_010334_050 0.0850659392 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000226_110 0.0993442294 - - -
7 Hb_168561_010 0.1277233721 - - PREDICTED: notchless protein homolog [Jatropha curcas]
8 Hb_000000_200 0.1324781818 - - PREDICTED: protein TRANSPARENT TESTA 12 [Jatropha curcas]
9 Hb_000645_250 0.1428718062 - - PREDICTED: putative beta-D-xylosidase [Jatropha curcas]
10 Hb_060152_010 0.1435434242 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
11 Hb_000609_020 0.147391585 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
12 Hb_003858_080 0.1528250326 - - Germin-like protein 2 [Theobroma cacao]
13 Hb_000751_060 0.1580640302 - - PREDICTED: extensin-2-like, partial [Sesamum indicum]
14 Hb_032223_020 0.1598364322 - - ATP binding protein, putative [Ricinus communis]
15 Hb_001675_040 0.1623727374 - - conserved hypothetical protein [Ricinus communis]
16 Hb_026419_010 0.163027405 - - PREDICTED: cyclin-D3-1-like [Jatropha curcas]
17 Hb_000668_050 0.1664057548 - - phosphoglycerate mutase, putative [Ricinus communis]
18 Hb_168319_060 0.1667250743 - - PREDICTED: cytochrome P450 CYP749A22-like [Populus euphratica]
19 Hb_015978_010 0.1680893698 - - PREDICTED: probable beta-D-xylosidase 2 [Populus euphratica]
20 Hb_001369_270 0.1699936287 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_116190_010 Hb_116190_010 Hb_000373_060 Hb_000373_060 Hb_116190_010--Hb_000373_060 Hb_003861_090 Hb_003861_090 Hb_116190_010--Hb_003861_090 Hb_006499_020 Hb_006499_020 Hb_116190_010--Hb_006499_020 Hb_010334_050 Hb_010334_050 Hb_116190_010--Hb_010334_050 Hb_000226_110 Hb_000226_110 Hb_116190_010--Hb_000226_110 Hb_168561_010 Hb_168561_010 Hb_116190_010--Hb_168561_010 Hb_000373_060--Hb_003861_090 Hb_000373_060--Hb_010334_050 Hb_000373_060--Hb_006499_020 Hb_000373_060--Hb_000226_110 Hb_000645_250 Hb_000645_250 Hb_000373_060--Hb_000645_250 Hb_003861_090--Hb_006499_020 Hb_003858_080 Hb_003858_080 Hb_003861_090--Hb_003858_080 Hb_003861_090--Hb_000226_110 Hb_003861_090--Hb_010334_050 Hb_006499_020--Hb_168561_010 Hb_006499_020--Hb_000226_110 Hb_000639_010 Hb_000639_010 Hb_006499_020--Hb_000639_010 Hb_000000_200 Hb_000000_200 Hb_010334_050--Hb_000000_200 Hb_000609_020 Hb_000609_020 Hb_010334_050--Hb_000609_020 Hb_008376_020 Hb_008376_020 Hb_010334_050--Hb_008376_020 Hb_026419_010 Hb_026419_010 Hb_000226_110--Hb_026419_010 Hb_001369_270 Hb_001369_270 Hb_000226_110--Hb_001369_270 Hb_168561_010--Hb_000639_010 Hb_004162_140 Hb_004162_140 Hb_168561_010--Hb_004162_140 Hb_000635_100 Hb_000635_100 Hb_168561_010--Hb_000635_100 Hb_007101_140 Hb_007101_140 Hb_168561_010--Hb_007101_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.148649 0.273222 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.346471 0.21746

CAGE analysis