Hb_116195_010

Information

Type -
Description -
Location Contig116195: 2554-3680
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_116195_010 0.0 - - -
2 Hb_142392_010 0.1918262992 - - PREDICTED: uncharacterized protein LOC105628741 [Jatropha curcas]
3 Hb_008507_050 0.2066721724 - - PREDICTED: S-adenosylmethionine decarboxylase proenzyme-like [Jatropha curcas]
4 Hb_010680_010 0.2288347966 - - -
5 Hb_004324_020 0.2399780767 - - -
6 Hb_008078_030 0.2594622708 - - -
7 Hb_020730_010 0.261660852 - - hypothetical protein CICLE_v10010243mg, partial [Citrus clementina]
8 Hb_002759_180 0.2705120452 - - PREDICTED: snakin-2-like [Jatropha curcas]
9 Hb_004048_140 0.2743146991 - - -
10 Hb_145761_010 0.2786418851 - - -
11 Hb_011161_070 0.2796148624 - - PREDICTED: kynurenine--oxoglutarate transaminase 1-like isoform X1 [Populus euphratica]
12 Hb_000627_100 0.2803768764 - - -
13 Hb_001493_110 0.2821079699 - - hypothetical protein JCGZ_24625 [Jatropha curcas]
14 Hb_030619_010 0.2883945005 - - -
15 Hb_015456_020 0.2890157969 - - -
16 Hb_001195_590 0.2910627809 - - PREDICTED: uncharacterized protein LOC105633753 [Jatropha curcas]
17 Hb_019219_020 0.2941637539 - - profilin-1 [Jatropha curcas]
18 Hb_001769_020 0.2964173728 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial-like [Jatropha curcas]
19 Hb_007017_060 0.2969667217 - - PREDICTED: 5-formyltetrahydrofolate cyclo-ligase, mitochondrial-like [Jatropha curcas]
20 Hb_086859_010 0.2990563754 - - -

Gene co-expression network

sample Hb_116195_010 Hb_116195_010 Hb_142392_010 Hb_142392_010 Hb_116195_010--Hb_142392_010 Hb_008507_050 Hb_008507_050 Hb_116195_010--Hb_008507_050 Hb_010680_010 Hb_010680_010 Hb_116195_010--Hb_010680_010 Hb_004324_020 Hb_004324_020 Hb_116195_010--Hb_004324_020 Hb_008078_030 Hb_008078_030 Hb_116195_010--Hb_008078_030 Hb_020730_010 Hb_020730_010 Hb_116195_010--Hb_020730_010 Hb_142392_010--Hb_010680_010 Hb_001265_010 Hb_001265_010 Hb_142392_010--Hb_001265_010 Hb_080083_010 Hb_080083_010 Hb_142392_010--Hb_080083_010 Hb_145761_010 Hb_145761_010 Hb_142392_010--Hb_145761_010 Hb_000088_060 Hb_000088_060 Hb_142392_010--Hb_000088_060 Hb_002759_180 Hb_002759_180 Hb_008507_050--Hb_002759_180 Hb_001493_110 Hb_001493_110 Hb_008507_050--Hb_001493_110 Hb_008507_050--Hb_004324_020 Hb_008507_050--Hb_142392_010 Hb_005529_010 Hb_005529_010 Hb_008507_050--Hb_005529_010 Hb_001158_030 Hb_001158_030 Hb_010680_010--Hb_001158_030 Hb_015456_020 Hb_015456_020 Hb_010680_010--Hb_015456_020 Hb_004374_060 Hb_004374_060 Hb_010680_010--Hb_004374_060 Hb_010680_010--Hb_145761_010 Hb_005214_110 Hb_005214_110 Hb_010680_010--Hb_005214_110 Hb_004048_140 Hb_004048_140 Hb_004324_020--Hb_004048_140 Hb_000012_180 Hb_000012_180 Hb_004324_020--Hb_000012_180 Hb_004324_020--Hb_080083_010 Hb_000525_040 Hb_000525_040 Hb_004324_020--Hb_000525_040 Hb_017417_010 Hb_017417_010 Hb_004324_020--Hb_017417_010 Hb_011161_070 Hb_011161_070 Hb_008078_030--Hb_011161_070 Hb_003029_080 Hb_003029_080 Hb_008078_030--Hb_003029_080 Hb_142522_010 Hb_142522_010 Hb_008078_030--Hb_142522_010 Hb_001811_040 Hb_001811_040 Hb_008078_030--Hb_001811_040 Hb_008078_030--Hb_145761_010 Hb_000221_100 Hb_000221_100 Hb_008078_030--Hb_000221_100 Hb_002843_100 Hb_002843_100 Hb_020730_010--Hb_002843_100 Hb_036227_010 Hb_036227_010 Hb_020730_010--Hb_036227_010 Hb_179511_010 Hb_179511_010 Hb_020730_010--Hb_179511_010 Hb_000482_110 Hb_000482_110 Hb_020730_010--Hb_000482_110 Hb_002141_020 Hb_002141_020 Hb_020730_010--Hb_002141_020 Hb_001754_170 Hb_001754_170 Hb_020730_010--Hb_001754_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.110917 0.0638269 0.0475795 0 0.308457 0.027922
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.145338 0.171405 0 0 0

CAGE analysis