Hb_116210_010

Information

Type -
Description -
Location Contig116210: 1169-3014
Sequence    

Annotation

kegg
ID rcu:RCOM_0405720
description protein with unknown function (EC:3.1.4.12)
nr
ID XP_002532404.1
description protein with unknown function [Ricinus communis]
swissprot
ID Q9LH50
description Ras-related protein RABA4d OS=Arabidopsis thaliana GN=RABA4D PE=1 SV=1
trembl
ID B9T2D5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0405720 PE=3 SV=1
Gene Ontology
ID GO:0005622
description ras-related protein raba4d

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_116210_010 0.0 - - protein with unknown function [Ricinus communis]
2 Hb_004785_220 0.1786293624 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.2 [Populus euphratica]
3 Hb_000580_210 0.1796800168 - - PREDICTED: cysteine-rich repeat secretory protein 15 [Jatropha curcas]
4 Hb_000928_200 0.1812344727 - - PREDICTED: RING-H2 finger protein ATL52-like [Jatropha curcas]
5 Hb_023308_010 0.1845700007 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
6 Hb_012787_020 0.1856385257 - - PREDICTED: thioredoxin H7-like [Jatropha curcas]
7 Hb_001541_170 0.1909930589 - - hypothetical protein JCGZ_17850 [Jatropha curcas]
8 Hb_009421_060 0.1918844864 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
9 Hb_001579_160 0.1928877509 - - PREDICTED: kininogen-1-like [Jatropha curcas]
10 Hb_005588_050 0.1932132375 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000302_320 0.1933671859 - - hypothetical protein JCGZ_26057 [Jatropha curcas]
12 Hb_000482_080 0.1944453323 - - PREDICTED: uncharacterized protein LOC105638144 [Jatropha curcas]
13 Hb_000847_110 0.1954213557 - - conserved hypothetical protein [Ricinus communis]
14 Hb_011861_090 0.195630231 - - PREDICTED: probable sodium-coupled neutral amino acid transporter 6 [Jatropha curcas]
15 Hb_000087_190 0.1972992395 - - hypothetical protein CICLE_v10033278mg [Citrus clementina]
16 Hb_000449_070 0.1979529778 - - unnamed protein product [Vitis vinifera]
17 Hb_005183_070 0.1999807954 - - PREDICTED: calmodulin-like protein 5 [Solanum lycopersicum]
18 Hb_004158_040 0.201345838 - - PREDICTED: WAT1-related protein At2g37460-like [Jatropha curcas]
19 Hb_000544_190 0.2015358689 - - ARF GTPase activator, putative [Ricinus communis]
20 Hb_000030_230 0.2017956903 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]

Gene co-expression network

sample Hb_116210_010 Hb_116210_010 Hb_004785_220 Hb_004785_220 Hb_116210_010--Hb_004785_220 Hb_000580_210 Hb_000580_210 Hb_116210_010--Hb_000580_210 Hb_000928_200 Hb_000928_200 Hb_116210_010--Hb_000928_200 Hb_023308_010 Hb_023308_010 Hb_116210_010--Hb_023308_010 Hb_012787_020 Hb_012787_020 Hb_116210_010--Hb_012787_020 Hb_001541_170 Hb_001541_170 Hb_116210_010--Hb_001541_170 Hb_003032_110 Hb_003032_110 Hb_004785_220--Hb_003032_110 Hb_115572_010 Hb_115572_010 Hb_004785_220--Hb_115572_010 Hb_011381_050 Hb_011381_050 Hb_004785_220--Hb_011381_050 Hb_002073_270 Hb_002073_270 Hb_004785_220--Hb_002073_270 Hb_036520_030 Hb_036520_030 Hb_004785_220--Hb_036520_030 Hb_009117_020 Hb_009117_020 Hb_004785_220--Hb_009117_020 Hb_005588_050 Hb_005588_050 Hb_000580_210--Hb_005588_050 Hb_000482_080 Hb_000482_080 Hb_000580_210--Hb_000482_080 Hb_000173_180 Hb_000173_180 Hb_000580_210--Hb_000173_180 Hb_004158_040 Hb_004158_040 Hb_000580_210--Hb_004158_040 Hb_000991_060 Hb_000991_060 Hb_000580_210--Hb_000991_060 Hb_000580_210--Hb_001541_170 Hb_000457_120 Hb_000457_120 Hb_000928_200--Hb_000457_120 Hb_000317_170 Hb_000317_170 Hb_000928_200--Hb_000317_170 Hb_005305_040 Hb_005305_040 Hb_000928_200--Hb_005305_040 Hb_000856_030 Hb_000856_030 Hb_000928_200--Hb_000856_030 Hb_000030_230 Hb_000030_230 Hb_000928_200--Hb_000030_230 Hb_000307_060 Hb_000307_060 Hb_000928_200--Hb_000307_060 Hb_154038_040 Hb_154038_040 Hb_023308_010--Hb_154038_040 Hb_023308_010--Hb_000457_120 Hb_004117_020 Hb_004117_020 Hb_023308_010--Hb_004117_020 Hb_001360_020 Hb_001360_020 Hb_023308_010--Hb_001360_020 Hb_023308_010--Hb_000928_200 Hb_001688_030 Hb_001688_030 Hb_023308_010--Hb_001688_030 Hb_012787_020--Hb_005588_050 Hb_071079_040 Hb_071079_040 Hb_012787_020--Hb_071079_040 Hb_000645_080 Hb_000645_080 Hb_012787_020--Hb_000645_080 Hb_028514_010 Hb_028514_010 Hb_012787_020--Hb_028514_010 Hb_012787_020--Hb_001541_170 Hb_012787_020--Hb_115572_010 Hb_001579_160 Hb_001579_160 Hb_001541_170--Hb_001579_160 Hb_000098_230 Hb_000098_230 Hb_001541_170--Hb_000098_230 Hb_001541_170--Hb_005588_050 Hb_009421_060 Hb_009421_060 Hb_001541_170--Hb_009421_060 Hb_007919_010 Hb_007919_010 Hb_001541_170--Hb_007919_010 Hb_001541_170--Hb_004158_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.180846 0.142893 1.48904 0 0.0495278
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.118909 0.027275 0.395252

CAGE analysis