Hb_116349_010

Information

Type -
Description -
Location Contig116349: 160-2082
Sequence    

Annotation

kegg
ID vvi:100262187
description uncharacterized LOC100262187
nr
ID XP_012436732.1
description PREDICTED: uncharacterized protein LOC105763153 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2SVJ0
description Gossypium raimondii chromosome 8, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_008G056800 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_116349_010 0.0 - - PREDICTED: uncharacterized protein LOC105763153 [Gossypium raimondii]
2 Hb_002983_060 0.1481219132 desease resistance Gene Name: NB-ARC Cc-nbs-lrr resistance protein, putative [Theobroma cacao]
3 Hb_010422_080 0.1893201072 - - -
4 Hb_000487_280 0.2023396241 - - -
5 Hb_000011_340 0.2296434677 - - PREDICTED: protein LURP-one-related 11-like [Jatropha curcas]
6 Hb_001520_020 0.2305891384 - - PREDICTED: metal tolerance protein C2 [Jatropha curcas]
7 Hb_001959_300 0.278167704 - - PREDICTED: 3-isopropylmalate dehydratase large subunit [Jatropha curcas]
8 Hb_012807_010 0.2831595199 - - -
9 Hb_004917_050 0.2849157721 - - -
10 Hb_008954_010 0.2885827703 - - -
11 Hb_092820_010 0.2895349488 - - hypothetical protein CISIN_1g033834mg [Citrus sinensis]
12 Hb_001348_110 0.2993710108 - - PREDICTED: esterase-like [Jatropha curcas]
13 Hb_000395_060 0.3086611105 - - -
14 Hb_004907_020 0.3148469115 - - PREDICTED: ABC transporter G family member 6-like [Jatropha curcas]
15 Hb_002928_210 0.3154002336 - - -
16 Hb_000062_410 0.3182021116 - - PREDICTED: uncharacterized protein LOC105644766 [Jatropha curcas]
17 Hb_000317_530 0.3191395569 - - hypothetical protein, partial [Pseudomonas fluorescens]
18 Hb_000979_050 0.3204475857 - - -
19 Hb_092820_020 0.3264105764 - - ATP binding protein, putative [Ricinus communis]
20 Hb_029920_040 0.3330585256 - - PREDICTED: uncharacterized protein LOC105635837 [Jatropha curcas]

Gene co-expression network

sample Hb_116349_010 Hb_116349_010 Hb_002983_060 Hb_002983_060 Hb_116349_010--Hb_002983_060 Hb_010422_080 Hb_010422_080 Hb_116349_010--Hb_010422_080 Hb_000487_280 Hb_000487_280 Hb_116349_010--Hb_000487_280 Hb_000011_340 Hb_000011_340 Hb_116349_010--Hb_000011_340 Hb_001520_020 Hb_001520_020 Hb_116349_010--Hb_001520_020 Hb_001959_300 Hb_001959_300 Hb_116349_010--Hb_001959_300 Hb_002983_060--Hb_010422_080 Hb_092820_010 Hb_092820_010 Hb_002983_060--Hb_092820_010 Hb_008954_010 Hb_008954_010 Hb_002983_060--Hb_008954_010 Hb_004917_050 Hb_004917_050 Hb_002983_060--Hb_004917_050 Hb_002983_060--Hb_000011_340 Hb_000317_530 Hb_000317_530 Hb_010422_080--Hb_000317_530 Hb_010422_080--Hb_000487_280 Hb_010422_080--Hb_000011_340 Hb_000062_410 Hb_000062_410 Hb_010422_080--Hb_000062_410 Hb_000487_280--Hb_000011_340 Hb_000487_280--Hb_001520_020 Hb_000487_280--Hb_008954_010 Hb_001348_110 Hb_001348_110 Hb_000487_280--Hb_001348_110 Hb_000011_340--Hb_001520_020 Hb_000011_340--Hb_001348_110 Hb_000011_340--Hb_008954_010 Hb_000804_030 Hb_000804_030 Hb_000011_340--Hb_000804_030 Hb_001520_020--Hb_001348_110 Hb_001520_020--Hb_008954_010 Hb_001520_020--Hb_000804_030 Hb_009954_050 Hb_009954_050 Hb_001520_020--Hb_009954_050 Hb_000395_060 Hb_000395_060 Hb_001959_300--Hb_000395_060 Hb_003963_020 Hb_003963_020 Hb_001959_300--Hb_003963_020 Hb_012807_010 Hb_012807_010 Hb_001959_300--Hb_012807_010 Hb_005009_020 Hb_005009_020 Hb_001959_300--Hb_005009_020 Hb_007409_020 Hb_007409_020 Hb_001959_300--Hb_007409_020 Hb_004691_040 Hb_004691_040 Hb_001959_300--Hb_004691_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0221573 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.108371 0.0852287 0 0.0686414 0

CAGE analysis