Hb_116349_030

Information

Type -
Description -
Location Contig116349: 4537-15112
Sequence    

Annotation

kegg
ID tcc:TCM_010141
description Zinc ion binding isoform 2
nr
ID XP_012092022.1
description PREDICTED: zinc finger MYND domain-containing protein 15 isoform X3 [Jatropha curcas]
swissprot
ID Q8C0R7
description Zinc finger MYND domain-containing protein 15 OS=Mus musculus GN=Zmynd15 PE=1 SV=1
trembl
ID A0A061E5M3
description Zinc ion binding isoform 3 OS=Theobroma cacao GN=TCM_010141 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05037: 4420-9027 , PASA_asmbl_05038: 5644-5781 , PASA_asmbl_05039: 9733-10664 , PASA_asmbl_05041: 12867-13171
cDNA
(Sanger)
(ID:Location)		 009_B10.ab1: 7769-8866 , 015_K01.ab1: 7740-8866 , 030_H07.ab1: 8021-9027

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_116349_030 0.0 - - PREDICTED: zinc finger MYND domain-containing protein 15 isoform X3 [Jatropha curcas]
2 Hb_007765_080 0.0530117249 - - PREDICTED: uncharacterized protein LOC105631001 isoform X2 [Jatropha curcas]
3 Hb_000107_400 0.0750817949 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46870-like [Jatropha curcas]
4 Hb_000574_440 0.0781193377 - - PREDICTED: uncharacterized protein LOC105634833 [Jatropha curcas]
5 Hb_000855_020 0.0833562835 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X1 [Populus euphratica]
6 Hb_008695_020 0.0854874289 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 1 [Jatropha curcas]
7 Hb_000003_290 0.0935097169 - - hypothetical protein JCGZ_24486 [Jatropha curcas]
8 Hb_000922_020 0.0960301905 - - protein binding protein, putative [Ricinus communis]
9 Hb_002221_050 0.0974363784 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP65 isoform X1 [Jatropha curcas]
10 Hb_001143_250 0.0985953676 - - PREDICTED: SWI/SNF complex subunit SWI3C isoform X1 [Jatropha curcas]
11 Hb_000227_250 0.0987578496 transcription factor TF Family: SNF2 PREDICTED: probable ATP-dependent DNA helicase CHR12 [Jatropha curcas]
12 Hb_105641_010 0.0992935322 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
13 Hb_001619_150 0.0993252285 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3 isoform X1 [Jatropha curcas]
14 Hb_000849_020 0.0995423278 - - PREDICTED: uncharacterized protein LOC105644228 isoform X1 [Jatropha curcas]
15 Hb_007943_120 0.0996847194 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X4 [Jatropha curcas]
16 Hb_005188_060 0.0998465816 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
17 Hb_000563_600 0.0998473875 - - PREDICTED: uncharacterized protein LOC104428079 [Eucalyptus grandis]
18 Hb_004635_050 0.1006756462 - - nucleolar phosphoprotein, putative [Ricinus communis]
19 Hb_011618_080 0.1014038952 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
20 Hb_019153_020 0.102488137 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_116349_030 Hb_116349_030 Hb_007765_080 Hb_007765_080 Hb_116349_030--Hb_007765_080 Hb_000107_400 Hb_000107_400 Hb_116349_030--Hb_000107_400 Hb_000574_440 Hb_000574_440 Hb_116349_030--Hb_000574_440 Hb_000855_020 Hb_000855_020 Hb_116349_030--Hb_000855_020 Hb_008695_020 Hb_008695_020 Hb_116349_030--Hb_008695_020 Hb_000003_290 Hb_000003_290 Hb_116349_030--Hb_000003_290 Hb_001619_150 Hb_001619_150 Hb_007765_080--Hb_001619_150 Hb_007765_080--Hb_000855_020 Hb_007765_080--Hb_000574_440 Hb_000260_440 Hb_000260_440 Hb_007765_080--Hb_000260_440 Hb_028308_010 Hb_028308_010 Hb_007765_080--Hb_028308_010 Hb_002749_110 Hb_002749_110 Hb_000107_400--Hb_002749_110 Hb_000107_400--Hb_008695_020 Hb_000107_400--Hb_000574_440 Hb_000849_020 Hb_000849_020 Hb_000107_400--Hb_000849_020 Hb_003018_130 Hb_003018_130 Hb_000107_400--Hb_003018_130 Hb_009503_030 Hb_009503_030 Hb_000574_440--Hb_009503_030 Hb_000084_250 Hb_000084_250 Hb_000574_440--Hb_000084_250 Hb_002221_050 Hb_002221_050 Hb_000574_440--Hb_002221_050 Hb_027380_140 Hb_027380_140 Hb_000574_440--Hb_027380_140 Hb_006831_110 Hb_006831_110 Hb_000574_440--Hb_006831_110 Hb_000768_070 Hb_000768_070 Hb_000574_440--Hb_000768_070 Hb_000855_020--Hb_001619_150 Hb_000671_070 Hb_000671_070 Hb_000855_020--Hb_000671_070 Hb_004912_030 Hb_004912_030 Hb_000855_020--Hb_004912_030 Hb_089140_050 Hb_089140_050 Hb_000855_020--Hb_089140_050 Hb_002835_230 Hb_002835_230 Hb_000855_020--Hb_002835_230 Hb_007007_060 Hb_007007_060 Hb_008695_020--Hb_007007_060 Hb_009646_030 Hb_009646_030 Hb_008695_020--Hb_009646_030 Hb_005993_050 Hb_005993_050 Hb_008695_020--Hb_005993_050 Hb_007904_120 Hb_007904_120 Hb_008695_020--Hb_007904_120 Hb_004055_150 Hb_004055_150 Hb_008695_020--Hb_004055_150 Hb_000003_290--Hb_009503_030 Hb_000032_490 Hb_000032_490 Hb_000003_290--Hb_000032_490 Hb_000003_290--Hb_003018_130 Hb_000003_290--Hb_000574_440 Hb_002367_130 Hb_002367_130 Hb_000003_290--Hb_002367_130 Hb_000003_290--Hb_000107_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
79.6829 61.3904 49.4605 32.0615 94.3343 48.0366
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
39.0368 22.0954 45.8777 28.0345 48.3967

CAGE analysis