Hb_116349_040

Information

Type transcription factor
Description TF Family: Orphans
Location Contig116349: 23288-24709
Sequence    

Annotation

kegg
ID rcu:RCOM_0699760
description two-component sensor protein histidine protein kinase, putative
nr
ID XP_012092019.1
description PREDICTED: two-component response regulator ARR5 [Jatropha curcas]
swissprot
ID Q9ZWS9
description Two-component response regulator ARR3 OS=Arabidopsis thaliana GN=ARR3 PE=2 SV=1
trembl
ID A0A067JP36
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21755 PE=4 SV=1
Gene Ontology
ID GO:0005622
description two-component response regulator arr5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05042: 23408-24583
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_116349_040 0.0 transcription factor TF Family: Orphans PREDICTED: two-component response regulator ARR5 [Jatropha curcas]
2 Hb_008066_070 0.1778480202 transcription factor TF Family: ERF AP2/ERF super family protein [Hevea brasiliensis]
3 Hb_007576_200 0.1887746046 - - amino acid transporter, putative [Ricinus communis]
4 Hb_000023_250 0.19138195 - - PREDICTED: VQ motif-containing protein 31-like [Jatropha curcas]
5 Hb_006453_010 0.1916876277 - - PREDICTED: glutaredoxin-C9 [Jatropha curcas]
6 Hb_006446_010 0.1926804163 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_001053_090 0.1945830738 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 30-like [Jatropha curcas]
8 Hb_000699_230 0.1949965627 - - Ankyrin repeat family protein, putative [Theobroma cacao]
9 Hb_000345_200 0.1958769531 - - PREDICTED: uncharacterized protein LOC105647522 [Jatropha curcas]
10 Hb_006573_300 0.1972847808 - - ATP binding protein, putative [Ricinus communis]
11 Hb_008511_100 0.1988998949 - - hypothetical protein POPTR_0009s11860g [Populus trichocarpa]
12 Hb_000983_080 0.2002719206 transcription factor TF Family: bZIP PREDICTED: ocs element-binding factor 1-like [Jatropha curcas]
13 Hb_001114_070 0.2043760905 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At1g58400 [Jatropha curcas]
14 Hb_027380_200 0.2046315721 transcription factor TF Family: ARF PREDICTED: auxin response factor 6 isoform X2 [Jatropha curcas]
15 Hb_001699_230 0.2058899366 - - PREDICTED: calcium-dependent protein kinase 28 [Jatropha curcas]
16 Hb_020805_170 0.2062807052 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
17 Hb_001146_010 0.2066217738 - - cystathionine gamma-synthase, putative [Ricinus communis]
18 Hb_006788_140 0.206730661 - - PREDICTED: uncharacterized protein LOC105649915 [Jatropha curcas]
19 Hb_001288_070 0.2077573047 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
20 Hb_126380_010 0.2082866615 desease resistance Gene Name: NB-ARC ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_116349_040 Hb_116349_040 Hb_008066_070 Hb_008066_070 Hb_116349_040--Hb_008066_070 Hb_007576_200 Hb_007576_200 Hb_116349_040--Hb_007576_200 Hb_000023_250 Hb_000023_250 Hb_116349_040--Hb_000023_250 Hb_006453_010 Hb_006453_010 Hb_116349_040--Hb_006453_010 Hb_006446_010 Hb_006446_010 Hb_116349_040--Hb_006446_010 Hb_001053_090 Hb_001053_090 Hb_116349_040--Hb_001053_090 Hb_020805_170 Hb_020805_170 Hb_008066_070--Hb_020805_170 Hb_011512_130 Hb_011512_130 Hb_008066_070--Hb_011512_130 Hb_000140_410 Hb_000140_410 Hb_008066_070--Hb_000140_410 Hb_000905_170 Hb_000905_170 Hb_008066_070--Hb_000905_170 Hb_007676_020 Hb_007676_020 Hb_008066_070--Hb_007676_020 Hb_000856_180 Hb_000856_180 Hb_008066_070--Hb_000856_180 Hb_003747_210 Hb_003747_210 Hb_007576_200--Hb_003747_210 Hb_000371_060 Hb_000371_060 Hb_007576_200--Hb_000371_060 Hb_000676_040 Hb_000676_040 Hb_007576_200--Hb_000676_040 Hb_000656_150 Hb_000656_150 Hb_007576_200--Hb_000656_150 Hb_000302_200 Hb_000302_200 Hb_007576_200--Hb_000302_200 Hb_002122_080 Hb_002122_080 Hb_007576_200--Hb_002122_080 Hb_000256_130 Hb_000256_130 Hb_000023_250--Hb_000256_130 Hb_000976_280 Hb_000976_280 Hb_000023_250--Hb_000976_280 Hb_000364_040 Hb_000364_040 Hb_000023_250--Hb_000364_040 Hb_005663_070 Hb_005663_070 Hb_000023_250--Hb_005663_070 Hb_006788_140 Hb_006788_140 Hb_000023_250--Hb_006788_140 Hb_006573_300 Hb_006573_300 Hb_006453_010--Hb_006573_300 Hb_000853_060 Hb_000853_060 Hb_006453_010--Hb_000853_060 Hb_001114_070 Hb_001114_070 Hb_006453_010--Hb_001114_070 Hb_000165_210 Hb_000165_210 Hb_006453_010--Hb_000165_210 Hb_000983_080 Hb_000983_080 Hb_006453_010--Hb_000983_080 Hb_000126_110 Hb_000126_110 Hb_006446_010--Hb_000126_110 Hb_003442_100 Hb_003442_100 Hb_006446_010--Hb_003442_100 Hb_001103_020 Hb_001103_020 Hb_006446_010--Hb_001103_020 Hb_006446_010--Hb_000983_080 Hb_006446_010--Hb_006788_140 Hb_001189_110 Hb_001189_110 Hb_006446_010--Hb_001189_110 Hb_000964_130 Hb_000964_130 Hb_001053_090--Hb_000964_130 Hb_000025_790 Hb_000025_790 Hb_001053_090--Hb_000025_790 Hb_003647_060 Hb_003647_060 Hb_001053_090--Hb_003647_060 Hb_012490_080 Hb_012490_080 Hb_001053_090--Hb_012490_080 Hb_010222_070 Hb_010222_070 Hb_001053_090--Hb_010222_070 Hb_002307_270 Hb_002307_270 Hb_001053_090--Hb_002307_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.0833 39.7603 3.70759 10.5154 2.29067 1.43792
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.3987 5.99406 13.2915 22.6256 9.1289

CAGE analysis