Hb_116349_080

Information

Type -
Description -
Location Contig116349: 40049-40705
Sequence    

Annotation

kegg
ID rcu:RCOM_0699790
description Nectarin-1 precursor, putative (EC:1.15.1.1)
nr
ID XP_002520204.1
description Nectarin-1 precursor, putative [Ricinus communis]
swissprot
ID P92998
description Germin-like protein subfamily 1 member 1 OS=Arabidopsis thaliana GN=GLP7 PE=2 SV=2
trembl
ID B9S2I5
description Nectarin-1, putative OS=Ricinus communis GN=RCOM_0699790 PE=4 SV=1
Gene Ontology
ID GO:0005576
description germin-like protein subfamily 1 member 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_116349_080 0.0 - - Nectarin-1 precursor, putative [Ricinus communis]
2 Hb_003197_050 0.0424540244 - - hypothetical protein JCGZ_04279 [Jatropha curcas]
3 Hb_000155_030 0.0547768672 - - PREDICTED: uncharacterized protein LOC105649591 [Jatropha curcas]
4 Hb_025557_090 0.0677999893 - - hypothetical protein glysoja_034865 [Glycine soja]
5 Hb_009158_010 0.071172743 - - PREDICTED: cytochrome P450 78A9 [Jatropha curcas]
6 Hb_000230_220 0.0749375148 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003598_050 0.0838772382 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
8 Hb_136944_010 0.0865218787 - - hypothetical protein JCGZ_02762 [Jatropha curcas]
9 Hb_000964_120 0.0867743174 - - DNA-damage-inducible protein f, putative [Ricinus communis]
10 Hb_000152_630 0.0923207415 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 [Jatropha curcas]
11 Hb_112950_010 0.097582117 - - hypothetical protein JCGZ_00277 [Jatropha curcas]
12 Hb_006573_120 0.0976718719 - - PREDICTED: DUF21 domain-containing protein At5g52790 [Jatropha curcas]
13 Hb_007292_060 0.0985306121 - - PREDICTED: uncharacterized protein LOC105632853 [Jatropha curcas]
14 Hb_000497_080 0.0986993703 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000934_120 0.1013281078 - - PREDICTED: tumor necrosis factor ligand superfamily member 6 [Populus euphratica]
16 Hb_011218_010 0.1013999626 - - PREDICTED: putative indole-3-acetic acid-amido synthetase GH3.9 [Jatropha curcas]
17 Hb_006351_050 0.1022486827 - - PREDICTED: uncharacterized protein LOC105133646 [Populus euphratica]
18 Hb_002686_220 0.102886983 - - PREDICTED: expansin-A15-like [Jatropha curcas]
19 Hb_004102_180 0.103067475 - - zinc finger family protein [Populus trichocarpa]
20 Hb_000188_140 0.1049775712 - - PREDICTED: germin-like protein subfamily 3 member 2 [Jatropha curcas]

Gene co-expression network

sample Hb_116349_080 Hb_116349_080 Hb_003197_050 Hb_003197_050 Hb_116349_080--Hb_003197_050 Hb_000155_030 Hb_000155_030 Hb_116349_080--Hb_000155_030 Hb_025557_090 Hb_025557_090 Hb_116349_080--Hb_025557_090 Hb_009158_010 Hb_009158_010 Hb_116349_080--Hb_009158_010 Hb_000230_220 Hb_000230_220 Hb_116349_080--Hb_000230_220 Hb_003598_050 Hb_003598_050 Hb_116349_080--Hb_003598_050 Hb_003197_050--Hb_000155_030 Hb_003197_050--Hb_000230_220 Hb_000964_120 Hb_000964_120 Hb_003197_050--Hb_000964_120 Hb_000497_080 Hb_000497_080 Hb_003197_050--Hb_000497_080 Hb_000934_120 Hb_000934_120 Hb_003197_050--Hb_000934_120 Hb_000155_030--Hb_025557_090 Hb_000155_030--Hb_009158_010 Hb_000155_030--Hb_000964_120 Hb_000155_030--Hb_000230_220 Hb_025557_090--Hb_009158_010 Hb_022250_140 Hb_022250_140 Hb_025557_090--Hb_022250_140 Hb_025557_090--Hb_000230_220 Hb_025557_090--Hb_000964_120 Hb_006573_120 Hb_006573_120 Hb_009158_010--Hb_006573_120 Hb_118934_010 Hb_118934_010 Hb_009158_010--Hb_118934_010 Hb_009158_010--Hb_022250_140 Hb_000152_630 Hb_000152_630 Hb_000230_220--Hb_000152_630 Hb_000188_140 Hb_000188_140 Hb_000230_220--Hb_000188_140 Hb_112950_010 Hb_112950_010 Hb_003598_050--Hb_112950_010 Hb_001500_020 Hb_001500_020 Hb_003598_050--Hb_001500_020 Hb_006351_050 Hb_006351_050 Hb_003598_050--Hb_006351_050 Hb_003598_050--Hb_000497_080 Hb_002686_220 Hb_002686_220 Hb_003598_050--Hb_002686_220 Hb_180088_010 Hb_180088_010 Hb_003598_050--Hb_180088_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.114692 4.57561 12.6435 85.833 0.112781 0.0524922
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 7.22937

CAGE analysis