Hb_116349_090

Information

Type -
Description -
Location Contig116349: 42171-43331
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa006911mg
description hypothetical protein
nr
ID XP_012092016.1
description PREDICTED: probable galacturonosyltransferase-like 9 [Jatropha curcas]
swissprot
ID O04536
description Probable galacturonosyltransferase-like 9 OS=Arabidopsis thaliana GN=GATL9 PE=2 SV=1
trembl
ID A0A067JP33
description Hexosyltransferase OS=Jatropha curcas GN=JCGZ_21750 PE=3 SV=1
Gene Ontology
ID GO:0000139
description probable galacturonosyltransferase-like 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05051: 41898-43767 , PASA_asmbl_05052: 41898-43721
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_116349_090 0.0 - - PREDICTED: probable galacturonosyltransferase-like 9 [Jatropha curcas]
2 Hb_000805_150 0.1015947525 transcription factor TF Family: GRAS transcription factor, putative [Ricinus communis]
3 Hb_001511_270 0.1018689848 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 29 [Jatropha curcas]
4 Hb_000245_270 0.1019094951 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
5 Hb_029238_020 0.1063056301 - - PREDICTED: expansin-like A1 [Jatropha curcas]
6 Hb_004242_160 0.1125802972 transcription factor TF Family: GRAS PREDICTED: chitin-inducible gibberellin-responsive protein 1-like isoform X1 [Jatropha curcas]
7 Hb_001477_080 0.1131937665 - - hypothetical protein POPTR_0017s04860g [Populus trichocarpa]
8 Hb_000529_050 0.1163264091 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
9 Hb_000506_140 0.1213128788 - - hypothetical protein PRUPE_ppb019425mg [Prunus persica]
10 Hb_011287_020 0.1238897599 - - ATP binding protein, putative [Ricinus communis]
11 Hb_000796_200 0.1244498294 - - PREDICTED: probable glycerol-3-phosphate acyltransferase 3 [Jatropha curcas]
12 Hb_010417_120 0.1245824762 - - conserved hypothetical protein [Ricinus communis]
13 Hb_158123_010 0.1290745699 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
14 Hb_000210_150 0.1297245458 - - PREDICTED: protein YLS9-like [Jatropha curcas]
15 Hb_000313_190 0.1317326112 - - PREDICTED: uncharacterized protein LOC105636896 [Jatropha curcas]
16 Hb_000506_130 0.132490109 - - DGCR14-related family protein [Populus trichocarpa]
17 Hb_000322_020 0.1363647099 - - PREDICTED: uncharacterized protein LOC105637914 [Jatropha curcas]
18 Hb_000181_080 0.1380331176 transcription factor TF Family: ERF ethylene-responsive transcription factor 5 [Hevea brasiliensis]
19 Hb_025477_020 0.1394008982 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF027 [Jatropha curcas]
20 Hb_006483_050 0.1422346972 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like [Jatropha curcas]

Gene co-expression network

sample Hb_116349_090 Hb_116349_090 Hb_000805_150 Hb_000805_150 Hb_116349_090--Hb_000805_150 Hb_001511_270 Hb_001511_270 Hb_116349_090--Hb_001511_270 Hb_000245_270 Hb_000245_270 Hb_116349_090--Hb_000245_270 Hb_029238_020 Hb_029238_020 Hb_116349_090--Hb_029238_020 Hb_004242_160 Hb_004242_160 Hb_116349_090--Hb_004242_160 Hb_001477_080 Hb_001477_080 Hb_116349_090--Hb_001477_080 Hb_000805_150--Hb_000245_270 Hb_078901_010 Hb_078901_010 Hb_000805_150--Hb_078901_010 Hb_011287_020 Hb_011287_020 Hb_000805_150--Hb_011287_020 Hb_009476_010 Hb_009476_010 Hb_000805_150--Hb_009476_010 Hb_007441_150 Hb_007441_150 Hb_000805_150--Hb_007441_150 Hb_001511_270--Hb_004242_160 Hb_002849_030 Hb_002849_030 Hb_001511_270--Hb_002849_030 Hb_001511_270--Hb_001477_080 Hb_009189_010 Hb_009189_010 Hb_001511_270--Hb_009189_010 Hb_000260_130 Hb_000260_130 Hb_001511_270--Hb_000260_130 Hb_000506_130 Hb_000506_130 Hb_000245_270--Hb_000506_130 Hb_000245_270--Hb_029238_020 Hb_004143_050 Hb_004143_050 Hb_000245_270--Hb_004143_050 Hb_000245_270--Hb_078901_010 Hb_029238_020--Hb_000805_150 Hb_029238_020--Hb_001511_270 Hb_002234_200 Hb_002234_200 Hb_029238_020--Hb_002234_200 Hb_029238_020--Hb_000506_130 Hb_010417_120 Hb_010417_120 Hb_004242_160--Hb_010417_120 Hb_004242_160--Hb_001477_080 Hb_001098_020 Hb_001098_020 Hb_004242_160--Hb_001098_020 Hb_000529_050 Hb_000529_050 Hb_004242_160--Hb_000529_050 Hb_000313_190 Hb_000313_190 Hb_004242_160--Hb_000313_190 Hb_001477_080--Hb_000529_050 Hb_001477_080--Hb_000313_190 Hb_002922_010 Hb_002922_010 Hb_001477_080--Hb_002922_010 Hb_004586_120 Hb_004586_120 Hb_001477_080--Hb_004586_120 Hb_000322_020 Hb_000322_020 Hb_001477_080--Hb_000322_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.04304 177.45 22.0675 49.5184 0.358314 0.611306
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.22415 1.82621 4.37794 2.59534 8.23048

CAGE analysis