Hb_116349_100

Information

Type rubber biosynthesis
Description Gene Name: Phosphomevalonate kinase
Location Contig116349: 49535-56146
Sequence    

Annotation

kegg
ID rcu:RCOM_0699810
description ATP binding protein, putative (EC:2.7.4.2)
nr
ID AFJ74328.1
description phosphomevalonate kinase [Hevea brasiliensis]
swissprot
ID Q9UT88
description Probable phosphomevalonate kinase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=erg8 PE=3 SV=1
trembl
ID A0A067JEV3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21749 PE=3 SV=1
Gene Ontology
ID GO:0004631
description probable phosphomevalonate kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05053: 49543-54601 , PASA_asmbl_05054: 49986-50121
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_116349_100 0.0 rubber biosynthesis Gene Name: Phosphomevalonate kinase phosphomevalonate kinase [Hevea brasiliensis]
2 Hb_000345_390 0.1018680903 - - hypothetical protein JCGZ_23349 [Jatropha curcas]
3 Hb_001053_180 0.1023353626 - - protein binding protein, putative [Ricinus communis]
4 Hb_003020_020 0.1071342449 - - PREDICTED: dnaJ homolog subfamily B member 8 isoform X1 [Jatropha curcas]
5 Hb_000505_010 0.1082561433 - - PREDICTED: uncharacterized protein LOC105641242 [Jatropha curcas]
6 Hb_001959_070 0.1175478361 - - PREDICTED: uncharacterized protein LOC105638451 isoform X1 [Jatropha curcas]
7 Hb_000096_090 0.1185684233 - - hypothetical protein JCGZ_12551 [Jatropha curcas]
8 Hb_024682_010 0.1196676242 - - sterol isomerase, putative [Ricinus communis]
9 Hb_000316_050 0.1205790925 - - enoyl-ACP reductase [Vernicia fordii]
10 Hb_000127_010 0.121442915 - - PREDICTED: ribonucleoside-diphosphate reductase large subunit [Populus euphratica]
11 Hb_000069_110 0.1224631795 - - PREDICTED: nephrocystin-3-like isoform X2 [Jatropha curcas]
12 Hb_011316_040 0.1225948158 - - peptidase, putative [Ricinus communis]
13 Hb_001396_180 0.1263203608 - - PREDICTED: uncharacterized protein LOC105644834 [Jatropha curcas]
14 Hb_004048_110 0.1284577479 - - hypothetical protein PHAVU_011G019700g [Phaseolus vulgaris]
15 Hb_101832_010 0.1292131921 - - nitrate transporter, putative [Ricinus communis]
16 Hb_002963_020 0.1296259512 - - conserved hypothetical protein [Ricinus communis]
17 Hb_112798_030 0.1316122044 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004738_080 0.134379344 - - transcription initiation factor TFIID subunit 13-like [Jatropha curcas]
19 Hb_001031_080 0.1353975948 - - PREDICTED: uncharacterized protein LOC105647773 isoform X1 [Jatropha curcas]
20 Hb_000270_270 0.1354338437 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH79-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_116349_100 Hb_116349_100 Hb_000345_390 Hb_000345_390 Hb_116349_100--Hb_000345_390 Hb_001053_180 Hb_001053_180 Hb_116349_100--Hb_001053_180 Hb_003020_020 Hb_003020_020 Hb_116349_100--Hb_003020_020 Hb_000505_010 Hb_000505_010 Hb_116349_100--Hb_000505_010 Hb_001959_070 Hb_001959_070 Hb_116349_100--Hb_001959_070 Hb_000096_090 Hb_000096_090 Hb_116349_100--Hb_000096_090 Hb_000345_390--Hb_001053_180 Hb_003683_120 Hb_003683_120 Hb_000345_390--Hb_003683_120 Hb_000127_010 Hb_000127_010 Hb_000345_390--Hb_000127_010 Hb_024682_010 Hb_024682_010 Hb_000345_390--Hb_024682_010 Hb_000345_390--Hb_003020_020 Hb_001053_180--Hb_024682_010 Hb_001053_180--Hb_000096_090 Hb_001053_180--Hb_000127_010 Hb_001031_080 Hb_001031_080 Hb_001053_180--Hb_001031_080 Hb_000768_170 Hb_000768_170 Hb_003020_020--Hb_000768_170 Hb_111985_050 Hb_111985_050 Hb_003020_020--Hb_111985_050 Hb_112798_030 Hb_112798_030 Hb_003020_020--Hb_112798_030 Hb_005186_050 Hb_005186_050 Hb_003020_020--Hb_005186_050 Hb_000251_070 Hb_000251_070 Hb_003020_020--Hb_000251_070 Hb_000347_540 Hb_000347_540 Hb_003020_020--Hb_000347_540 Hb_001396_180 Hb_001396_180 Hb_000505_010--Hb_001396_180 Hb_011316_040 Hb_011316_040 Hb_000505_010--Hb_011316_040 Hb_000236_070 Hb_000236_070 Hb_000505_010--Hb_000236_070 Hb_003376_040 Hb_003376_040 Hb_000505_010--Hb_003376_040 Hb_000505_010--Hb_000096_090 Hb_001348_180 Hb_001348_180 Hb_001959_070--Hb_001348_180 Hb_000173_290 Hb_000173_290 Hb_001959_070--Hb_000173_290 Hb_001100_060 Hb_001100_060 Hb_001959_070--Hb_001100_060 Hb_002205_070 Hb_002205_070 Hb_001959_070--Hb_002205_070 Hb_004837_030 Hb_004837_030 Hb_001959_070--Hb_004837_030 Hb_001959_070--Hb_000236_070 Hb_000096_090--Hb_003376_040 Hb_000096_090--Hb_001396_180 Hb_000648_110 Hb_000648_110 Hb_000096_090--Hb_000648_110 Hb_000316_050 Hb_000316_050 Hb_000096_090--Hb_000316_050 Hb_003732_020 Hb_003732_020 Hb_000096_090--Hb_003732_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.8726 0.943239 4.91289 4.9137 12.2252 8.96918
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.793 14.004 12.6267 1.17324 6.64411

CAGE analysis