Hb_116349_150

Information

Type -
Description -
Location Contig116349: 96596-101264
Sequence    

Annotation

kegg
ID rcu:RCOM_0699600
description Microtubule-associated protein TORTIFOLIA1, putative
nr
ID XP_012092005.1
description PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
swissprot
ID Q9T041
description Microtubule-associated protein TORTIFOLIA1 OS=Arabidopsis thaliana GN=TOR1 PE=1 SV=2
trembl
ID A0A067JEU8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21744 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05063: 97018-100927 , PASA_asmbl_05064: 96587-100513
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_116349_150 0.0 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
2 Hb_002835_170 0.0975412247 - - PREDICTED: uncharacterized protein LOC105640307 [Jatropha curcas]
3 Hb_006787_040 0.1026816278 - - polyadenylate-binding protein, putative [Ricinus communis]
4 Hb_000193_230 0.1059716414 - - PREDICTED: NEP1-interacting protein-like 2 isoform X1 [Jatropha curcas]
5 Hb_001102_010 0.1078202894 - - PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial-like isoform X2 [Glycine max]
6 Hb_029223_030 0.1083020255 - - hypothetical protein POPTR_0006s12500g [Populus trichocarpa]
7 Hb_000078_030 0.1087720206 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000571_070 0.1093385861 transcription factor TF Family: G2-like PREDICTED: putative Myb family transcription factor At1g14600 [Jatropha curcas]
9 Hb_008408_030 0.111558136 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
10 Hb_001478_050 0.1121773727 - - PREDICTED: uncharacterized protein LOC105640307 [Jatropha curcas]
11 Hb_005455_070 0.1170658531 - - hypothetical protein POPTR_0001s04440g [Populus trichocarpa]
12 Hb_001140_160 0.1175556223 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
13 Hb_102864_010 0.1223250682 - - hypothetical protein POPTR_0008s14250g [Populus trichocarpa]
14 Hb_004724_040 0.1223883373 - - PREDICTED: uncharacterized protein LOC105640153 isoform X1 [Jatropha curcas]
15 Hb_000933_140 0.1233396598 - - PREDICTED: uncharacterized protein LOC105630501 [Jatropha curcas]
16 Hb_001191_100 0.1234762798 - - F-actin capping protein beta subunit [Populus trichocarpa]
17 Hb_002326_030 0.1237267189 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein REM16-like isoform X1 [Jatropha curcas]
18 Hb_000264_190 0.1256428417 - - sphingolipid delta 4 desaturase/C-4 hydroxylase protein des2, putative [Ricinus communis]
19 Hb_011457_100 0.1258701952 - - ATP binding protein, putative [Ricinus communis]
20 Hb_162275_010 0.1270910528 - - -

Gene co-expression network

sample Hb_116349_150 Hb_116349_150 Hb_002835_170 Hb_002835_170 Hb_116349_150--Hb_002835_170 Hb_006787_040 Hb_006787_040 Hb_116349_150--Hb_006787_040 Hb_000193_230 Hb_000193_230 Hb_116349_150--Hb_000193_230 Hb_001102_010 Hb_001102_010 Hb_116349_150--Hb_001102_010 Hb_029223_030 Hb_029223_030 Hb_116349_150--Hb_029223_030 Hb_000078_030 Hb_000078_030 Hb_116349_150--Hb_000078_030 Hb_011457_100 Hb_011457_100 Hb_002835_170--Hb_011457_100 Hb_001478_050 Hb_001478_050 Hb_002835_170--Hb_001478_050 Hb_002835_170--Hb_001102_010 Hb_002301_320 Hb_002301_320 Hb_002835_170--Hb_002301_320 Hb_001606_070 Hb_001606_070 Hb_002835_170--Hb_001606_070 Hb_000849_040 Hb_000849_040 Hb_006787_040--Hb_000849_040 Hb_000442_030 Hb_000442_030 Hb_006787_040--Hb_000442_030 Hb_006787_040--Hb_000193_230 Hb_000387_080 Hb_000387_080 Hb_006787_040--Hb_000387_080 Hb_001366_220 Hb_001366_220 Hb_006787_040--Hb_001366_220 Hb_001191_100 Hb_001191_100 Hb_006787_040--Hb_001191_100 Hb_000193_230--Hb_000078_030 Hb_002298_040 Hb_002298_040 Hb_000193_230--Hb_002298_040 Hb_115919_020 Hb_115919_020 Hb_000193_230--Hb_115919_020 Hb_012305_060 Hb_012305_060 Hb_000193_230--Hb_012305_060 Hb_000284_010 Hb_000284_010 Hb_000193_230--Hb_000284_010 Hb_001102_010--Hb_000078_030 Hb_001102_010--Hb_011457_100 Hb_000787_070 Hb_000787_070 Hb_001102_010--Hb_000787_070 Hb_005016_130 Hb_005016_130 Hb_001102_010--Hb_005016_130 Hb_001102_010--Hb_000193_230 Hb_183963_020 Hb_183963_020 Hb_029223_030--Hb_183963_020 Hb_000563_590 Hb_000563_590 Hb_029223_030--Hb_000563_590 Hb_000032_260 Hb_000032_260 Hb_029223_030--Hb_000032_260 Hb_009026_050 Hb_009026_050 Hb_029223_030--Hb_009026_050 Hb_002326_030 Hb_002326_030 Hb_029223_030--Hb_002326_030 Hb_000078_030--Hb_000284_010 Hb_000078_030--Hb_005016_130 Hb_000078_030--Hb_115919_020 Hb_000078_030--Hb_002298_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
58.6439 1.64846 2.02068 1.60733 24.4808 45.7374
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
40.2839 41.1331 39.709 5.93512 2.55129

CAGE analysis