Hb_116349_160

Information

Type -
Description -
Location Contig116349: 103746-105500
Sequence    

Annotation

kegg
ID rcu:RCOM_0699480
description ubiquitin-protein ligase, putative
nr
ID XP_012092004.1
description PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
swissprot
ID B9S2H4
description UPF0392 protein RCOM_0530710 OS=Ricinus communis GN=RCOM_0699480 PE=3 SV=1
trembl
ID A0A067JBW8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21743 PE=4 SV=1
Gene Ontology
ID GO:0016021
description upf0392 protein rcom_0530710

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05065: 103612-105689
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_116349_160 0.0 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
2 Hb_000956_130 0.0915825169 - - hypothetical protein POPTR_0002s12620g [Populus trichocarpa]
3 Hb_000761_020 0.0984332717 - - PREDICTED: uncharacterized protein LOC105638198 [Jatropha curcas]
4 Hb_004218_150 0.1023367184 - - electron transporter, putative [Ricinus communis]
5 Hb_028358_010 0.1067316758 - - PREDICTED: serine/threonine-protein kinase CTR1 isoform X1 [Jatropha curcas]
6 Hb_000120_240 0.1095637016 - - PREDICTED: uncharacterized protein LOC105630166 [Jatropha curcas]
7 Hb_007594_030 0.1112767848 - - PREDICTED: cucumber peeling cupredoxin-like [Jatropha curcas]
8 Hb_109842_010 0.1179547867 - - PREDICTED: uncharacterized protein LOC105647554 isoform X2 [Jatropha curcas]
9 Hb_000236_380 0.1180690415 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
10 Hb_007477_080 0.119944395 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005662_030 0.1199840899 - - protein with unknown function [Ricinus communis]
12 Hb_007064_040 0.1201209883 - - hypothetical protein RCOM_0254640 [Ricinus communis]
13 Hb_033153_050 0.1204658007 transcription factor TF Family: VOZ conserved hypothetical protein [Ricinus communis]
14 Hb_000699_140 0.1220916079 transcription factor TF Family: Orphans ethylene receptor, putative [Ricinus communis]
15 Hb_000009_170 0.1229580339 - - dolichyl-diphosphooligosaccharide--protein glycosyltransferase, putative [Ricinus communis]
16 Hb_005306_110 0.12325717 - - casein kinase, putative [Ricinus communis]
17 Hb_033843_010 0.124038981 - - PREDICTED: cell division control protein 2 homolog A isoform X1 [Jatropha curcas]
18 Hb_029920_050 0.1243584161 - - PREDICTED: putative HVA22-like protein g [Jatropha curcas]
19 Hb_000620_010 0.1249566375 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
20 Hb_006400_040 0.1269350749 - - PREDICTED: uncharacterized protein LOC105642527 [Jatropha curcas]

Gene co-expression network

sample Hb_116349_160 Hb_116349_160 Hb_000956_130 Hb_000956_130 Hb_116349_160--Hb_000956_130 Hb_000761_020 Hb_000761_020 Hb_116349_160--Hb_000761_020 Hb_004218_150 Hb_004218_150 Hb_116349_160--Hb_004218_150 Hb_028358_010 Hb_028358_010 Hb_116349_160--Hb_028358_010 Hb_000120_240 Hb_000120_240 Hb_116349_160--Hb_000120_240 Hb_007594_030 Hb_007594_030 Hb_116349_160--Hb_007594_030 Hb_000956_130--Hb_028358_010 Hb_004007_160 Hb_004007_160 Hb_000956_130--Hb_004007_160 Hb_000956_130--Hb_000120_240 Hb_000956_130--Hb_000761_020 Hb_029920_050 Hb_029920_050 Hb_000956_130--Hb_029920_050 Hb_000620_010 Hb_000620_010 Hb_000761_020--Hb_000620_010 Hb_000001_020 Hb_000001_020 Hb_000761_020--Hb_000001_020 Hb_000436_070 Hb_000436_070 Hb_000761_020--Hb_000436_070 Hb_000836_630 Hb_000836_630 Hb_000761_020--Hb_000836_630 Hb_007064_040 Hb_007064_040 Hb_000761_020--Hb_007064_040 Hb_001360_040 Hb_001360_040 Hb_000761_020--Hb_001360_040 Hb_000392_070 Hb_000392_070 Hb_004218_150--Hb_000392_070 Hb_006400_040 Hb_006400_040 Hb_004218_150--Hb_006400_040 Hb_002027_260 Hb_002027_260 Hb_004218_150--Hb_002027_260 Hb_005306_110 Hb_005306_110 Hb_004218_150--Hb_005306_110 Hb_000139_410 Hb_000139_410 Hb_004218_150--Hb_000139_410 Hb_028358_010--Hb_004007_160 Hb_028358_010--Hb_000761_020 Hb_028358_010--Hb_000120_240 Hb_000390_170 Hb_000390_170 Hb_028358_010--Hb_000390_170 Hb_004449_220 Hb_004449_220 Hb_000120_240--Hb_004449_220 Hb_000625_020 Hb_000625_020 Hb_000120_240--Hb_000625_020 Hb_057183_040 Hb_057183_040 Hb_000120_240--Hb_057183_040 Hb_005662_030 Hb_005662_030 Hb_000120_240--Hb_005662_030 Hb_000028_470 Hb_000028_470 Hb_000120_240--Hb_000028_470 Hb_007951_060 Hb_007951_060 Hb_007594_030--Hb_007951_060 Hb_033843_010 Hb_033843_010 Hb_007594_030--Hb_033843_010 Hb_000451_010 Hb_000451_010 Hb_007594_030--Hb_000451_010 Hb_000327_120 Hb_000327_120 Hb_007594_030--Hb_000327_120 Hb_001439_150 Hb_001439_150 Hb_007594_030--Hb_001439_150 Hb_002506_020 Hb_002506_020 Hb_007594_030--Hb_002506_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.5519 5.42095 5.79879 10.8648 13.0058 13.8743
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.79405 7.84968 14.5571 4.73988 2.55156

CAGE analysis