Hb_116349_170

Information

Type -
Description -
Location Contig116349: 105951-109782
Sequence    

Annotation

kegg
ID gmx:100776666
description uncharacterized LOC100776666
nr
ID XP_012092000.1
description PREDICTED: uncharacterized protein LOC105649815 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JBS9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21742 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_116349_170 0.0 - - PREDICTED: uncharacterized protein LOC105649815 [Jatropha curcas]
2 Hb_000261_460 0.1061449044 - - 60S ribosomal protein L13aA [Hevea brasiliensis]
3 Hb_011139_020 0.1099542168 - - Mitochondrial import receptor subunit TOM7-1, putative [Ricinus communis]
4 Hb_000362_210 0.112052133 - - PREDICTED: transcription elongation factor 1 homolog [Jatropha curcas]
5 Hb_000449_040 0.1125912274 - - protein with unknown function [Ricinus communis]
6 Hb_100777_010 0.113984272 - - PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like [Populus euphratica]
7 Hb_007021_020 0.1172932294 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]
8 Hb_001235_070 0.1221141803 - - conserved hypothetical protein [Ricinus communis]
9 Hb_012515_010 0.1254841021 - - PREDICTED: 60S ribosomal protein L30-like [Gossypium raimondii]
10 Hb_002781_020 0.1265451472 - - PREDICTED: uncharacterized protein LOC105644398 isoform X2 [Jatropha curcas]
11 Hb_001454_330 0.1267499148 - - PREDICTED: 60S ribosomal protein L22-2-like [Jatropha curcas]
12 Hb_004595_020 0.1278344036 - - PREDICTED: probable prefoldin subunit 5 [Jatropha curcas]
13 Hb_005997_010 0.1284176366 - - Dihydroorotate dehydrogenase (quinone) [Morus notabilis]
14 Hb_001369_050 0.1299798791 - - hypothetical protein MIMGU_mgv1a0083172mg, partial [Erythranthe guttata]
15 Hb_000479_180 0.130474384 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001754_010 0.1311638046 - - translationally controlled tumor protein [Hevea brasiliensis]
17 Hb_003680_070 0.1312724518 - - PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
18 Hb_008847_020 0.1315986544 - - 40S ribosomal protein S17C [Hevea brasiliensis]
19 Hb_000580_080 0.1318872374 - - hypothetical protein CICLE_v10006145mg [Citrus clementina]
20 Hb_005686_110 0.132353337 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Populus euphratica]

Gene co-expression network

sample Hb_116349_170 Hb_116349_170 Hb_000261_460 Hb_000261_460 Hb_116349_170--Hb_000261_460 Hb_011139_020 Hb_011139_020 Hb_116349_170--Hb_011139_020 Hb_000362_210 Hb_000362_210 Hb_116349_170--Hb_000362_210 Hb_000449_040 Hb_000449_040 Hb_116349_170--Hb_000449_040 Hb_100777_010 Hb_100777_010 Hb_116349_170--Hb_100777_010 Hb_007021_020 Hb_007021_020 Hb_116349_170--Hb_007021_020 Hb_005618_040 Hb_005618_040 Hb_000261_460--Hb_005618_040 Hb_000089_160 Hb_000089_160 Hb_000261_460--Hb_000089_160 Hb_000051_040 Hb_000051_040 Hb_000261_460--Hb_000051_040 Hb_003680_070 Hb_003680_070 Hb_000261_460--Hb_003680_070 Hb_000261_460--Hb_007021_020 Hb_100506_010 Hb_100506_010 Hb_000261_460--Hb_100506_010 Hb_000152_430 Hb_000152_430 Hb_011139_020--Hb_000152_430 Hb_012515_010 Hb_012515_010 Hb_011139_020--Hb_012515_010 Hb_025193_050 Hb_025193_050 Hb_011139_020--Hb_025193_050 Hb_024650_050 Hb_024650_050 Hb_011139_020--Hb_024650_050 Hb_004595_020 Hb_004595_020 Hb_011139_020--Hb_004595_020 Hb_001840_120 Hb_001840_120 Hb_011139_020--Hb_001840_120 Hb_002660_160 Hb_002660_160 Hb_000362_210--Hb_002660_160 Hb_000362_210--Hb_007021_020 Hb_084849_020 Hb_084849_020 Hb_000362_210--Hb_084849_020 Hb_010172_030 Hb_010172_030 Hb_000362_210--Hb_010172_030 Hb_000479_180 Hb_000479_180 Hb_000362_210--Hb_000479_180 Hb_000634_050 Hb_000634_050 Hb_000362_210--Hb_000634_050 Hb_002781_020 Hb_002781_020 Hb_000449_040--Hb_002781_020 Hb_000487_320 Hb_000487_320 Hb_000449_040--Hb_000487_320 Hb_000645_190 Hb_000645_190 Hb_000449_040--Hb_000645_190 Hb_143629_230 Hb_143629_230 Hb_000449_040--Hb_143629_230 Hb_000134_020 Hb_000134_020 Hb_000449_040--Hb_000134_020 Hb_000087_020 Hb_000087_020 Hb_100777_010--Hb_000087_020 Hb_001235_070 Hb_001235_070 Hb_100777_010--Hb_001235_070 Hb_100777_010--Hb_000362_210 Hb_000333_090 Hb_000333_090 Hb_100777_010--Hb_000333_090 Hb_001369_050 Hb_001369_050 Hb_100777_010--Hb_001369_050 Hb_002259_150 Hb_002259_150 Hb_100777_010--Hb_002259_150 Hb_007021_020--Hb_002660_160 Hb_007021_020--Hb_000051_040 Hb_183963_020 Hb_183963_020 Hb_007021_020--Hb_183963_020 Hb_000212_260 Hb_000212_260 Hb_007021_020--Hb_000212_260 Hb_001427_120 Hb_001427_120 Hb_007021_020--Hb_001427_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.29972 0.565008 0.27423 0.6375 1.51515 6.08652
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.41385 7.70899 3.85471 2.28121 0.924386

CAGE analysis