Hb_116360_010

Information

Type -
Description -
Location Contig116360: 2378-3917
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_116360_010 0.0 - - -
2 Hb_052802_010 0.2017967618 - - kinase, putative [Ricinus communis]
3 Hb_000174_020 0.224143172 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
4 Hb_002400_370 0.2345564108 - - PREDICTED: uncharacterized protein LOC105637607 [Jatropha curcas]
5 Hb_002498_210 0.2495117408 - - SKU5 similar 4 isoform 3 [Theobroma cacao]
6 Hb_007545_200 0.2521745611 - - Pectinesterase-3 precursor, putative [Ricinus communis]
7 Hb_008536_030 0.2562274423 - - hypothetical protein POPTR_0005s08290g [Populus trichocarpa]
8 Hb_083493_020 0.2563627113 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera]
9 Hb_026620_010 0.2621102912 - - -
10 Hb_119600_020 0.2636365308 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
11 Hb_011381_090 0.2706838375 - - Protein ABC1, mitochondrial precursor, putative [Ricinus communis]
12 Hb_000270_550 0.271745897 - - -
13 Hb_001195_240 0.2747509494 transcription factor TF Family: MYB-related PREDICTED: protein RADIALIS-like 3 [Jatropha curcas]
14 Hb_004242_070 0.276461819 - - putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana]
15 Hb_000146_100 0.2783660919 - - conserved hypothetical protein [Ricinus communis]
16 Hb_076233_010 0.2794506932 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003582_010 0.2813436693 - - hypothetical protein EUGRSUZ_B026451, partial [Eucalyptus grandis]
18 Hb_002820_130 0.2869975468 - - -
19 Hb_001645_100 0.287230855 - - -
20 Hb_004330_060 0.2913079902 - - hypothetical protein POPTR_0011s01530g [Populus trichocarpa]

Gene co-expression network

sample Hb_116360_010 Hb_116360_010 Hb_052802_010 Hb_052802_010 Hb_116360_010--Hb_052802_010 Hb_000174_020 Hb_000174_020 Hb_116360_010--Hb_000174_020 Hb_002400_370 Hb_002400_370 Hb_116360_010--Hb_002400_370 Hb_002498_210 Hb_002498_210 Hb_116360_010--Hb_002498_210 Hb_007545_200 Hb_007545_200 Hb_116360_010--Hb_007545_200 Hb_008536_030 Hb_008536_030 Hb_116360_010--Hb_008536_030 Hb_001810_050 Hb_001810_050 Hb_052802_010--Hb_001810_050 Hb_004204_040 Hb_004204_040 Hb_052802_010--Hb_004204_040 Hb_052802_010--Hb_007545_200 Hb_012640_010 Hb_012640_010 Hb_052802_010--Hb_012640_010 Hb_119600_020 Hb_119600_020 Hb_052802_010--Hb_119600_020 Hb_071079_060 Hb_071079_060 Hb_052802_010--Hb_071079_060 Hb_000270_550 Hb_000270_550 Hb_000174_020--Hb_000270_550 Hb_005900_020 Hb_005900_020 Hb_000174_020--Hb_005900_020 Hb_003582_010 Hb_003582_010 Hb_000174_020--Hb_003582_010 Hb_007075_020 Hb_007075_020 Hb_000174_020--Hb_007075_020 Hb_066350_010 Hb_066350_010 Hb_000174_020--Hb_066350_010 Hb_008385_010 Hb_008385_010 Hb_000174_020--Hb_008385_010 Hb_002400_370--Hb_002498_210 Hb_004242_070 Hb_004242_070 Hb_002400_370--Hb_004242_070 Hb_000184_140 Hb_000184_140 Hb_002400_370--Hb_000184_140 Hb_083493_020 Hb_083493_020 Hb_002400_370--Hb_083493_020 Hb_000624_020 Hb_000624_020 Hb_002400_370--Hb_000624_020 Hb_000646_020 Hb_000646_020 Hb_002498_210--Hb_000646_020 Hb_002498_210--Hb_000184_140 Hb_076233_010 Hb_076233_010 Hb_002498_210--Hb_076233_010 Hb_002498_210--Hb_083493_020 Hb_000343_170 Hb_000343_170 Hb_007545_200--Hb_000343_170 Hb_007545_200--Hb_119600_020 Hb_003906_030 Hb_003906_030 Hb_007545_200--Hb_003906_030 Hb_020805_160 Hb_020805_160 Hb_007545_200--Hb_020805_160 Hb_007545_200--Hb_001810_050 Hb_008536_030--Hb_003582_010 Hb_000959_150 Hb_000959_150 Hb_008536_030--Hb_000959_150 Hb_059226_020 Hb_059226_020 Hb_008536_030--Hb_059226_020 Hb_022597_010 Hb_022597_010 Hb_008536_030--Hb_022597_010 Hb_080068_010 Hb_080068_010 Hb_008536_030--Hb_080068_010 Hb_002054_090 Hb_002054_090 Hb_008536_030--Hb_002054_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.115251 0.103857 0 0.49795 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0966184 0

CAGE analysis