Hb_116420_030

Information

Type -
Description -
Location Contig116420: 10521-14688
Sequence    

Annotation

kegg
ID pop:POPTR_0007s14760g
description hypothetical protein
nr
ID XP_006380825.1
description hypothetical protein POPTR_0007s14760g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5GB04
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s14760g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_116420_030 0.0 - - hypothetical protein POPTR_0007s14760g [Populus trichocarpa]
2 Hb_000465_040 0.0843094281 - - PREDICTED: uncharacterized protein LOC103433005 isoform X1 [Malus domestica]
3 Hb_001279_070 0.0944696658 - - PREDICTED: uncharacterized protein LOC105633300 [Jatropha curcas]
4 Hb_000723_090 0.1000715275 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000484_020 0.1030684699 - - hypothetical protein CISIN_1g030884mg [Citrus sinensis]
6 Hb_007432_080 0.1057162155 - - PREDICTED: mannose-6-phosphate isomerase 1-like [Jatropha curcas]
7 Hb_070986_010 0.1088318226 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
8 Hb_004117_290 0.110158076 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000505_140 0.1118419073 - - PREDICTED: actin-related protein 2/3 complex subunit 3 [Populus euphratica]
10 Hb_032202_090 0.112443448 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Jatropha curcas]
11 Hb_003927_140 0.112807693 - - PREDICTED: nudix hydrolase 9 isoform X1 [Jatropha curcas]
12 Hb_002105_090 0.1140987048 - - Rab4 [Hevea brasiliensis]
13 Hb_000000_170 0.1170376956 - - defender against cell death, putative [Ricinus communis]
14 Hb_001184_090 0.1180637316 - - PREDICTED: TIP41-like protein [Jatropha curcas]
15 Hb_004102_190 0.1199741459 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic isoform X1 [Populus euphratica]
16 Hb_011931_050 0.1217402777 - - fk506-binding protein, putative [Ricinus communis]
17 Hb_010407_040 0.1223576455 - - PREDICTED: uncharacterized protein At4g14342 isoform X1 [Nelumbo nucifera]
18 Hb_000454_050 0.1238910813 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 [Vitis vinifera]
19 Hb_002311_320 0.1240337832 - - PREDICTED: mediator of RNA polymerase II transcription subunit 20a [Jatropha curcas]
20 Hb_000316_110 0.124459704 - - Dolichyl-phosphate beta-glucosyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_116420_030 Hb_116420_030 Hb_000465_040 Hb_000465_040 Hb_116420_030--Hb_000465_040 Hb_001279_070 Hb_001279_070 Hb_116420_030--Hb_001279_070 Hb_000723_090 Hb_000723_090 Hb_116420_030--Hb_000723_090 Hb_000484_020 Hb_000484_020 Hb_116420_030--Hb_000484_020 Hb_007432_080 Hb_007432_080 Hb_116420_030--Hb_007432_080 Hb_070986_010 Hb_070986_010 Hb_116420_030--Hb_070986_010 Hb_000457_110 Hb_000457_110 Hb_000465_040--Hb_000457_110 Hb_000465_040--Hb_000723_090 Hb_002105_090 Hb_002105_090 Hb_000465_040--Hb_002105_090 Hb_000714_030 Hb_000714_030 Hb_000465_040--Hb_000714_030 Hb_000084_290 Hb_000084_290 Hb_000465_040--Hb_000084_290 Hb_003874_020 Hb_003874_020 Hb_001279_070--Hb_003874_020 Hb_032202_090 Hb_032202_090 Hb_001279_070--Hb_032202_090 Hb_009767_120 Hb_009767_120 Hb_001279_070--Hb_009767_120 Hb_000365_380 Hb_000365_380 Hb_001279_070--Hb_000365_380 Hb_002893_060 Hb_002893_060 Hb_001279_070--Hb_002893_060 Hb_001279_070--Hb_007432_080 Hb_000723_090--Hb_002105_090 Hb_000500_130 Hb_000500_130 Hb_000723_090--Hb_000500_130 Hb_000316_110 Hb_000316_110 Hb_000723_090--Hb_000316_110 Hb_159558_030 Hb_159558_030 Hb_000723_090--Hb_159558_030 Hb_002400_220 Hb_002400_220 Hb_000723_090--Hb_002400_220 Hb_002571_020 Hb_002571_020 Hb_000484_020--Hb_002571_020 Hb_012022_120 Hb_012022_120 Hb_000484_020--Hb_012022_120 Hb_000995_040 Hb_000995_040 Hb_000484_020--Hb_000995_040 Hb_000312_090 Hb_000312_090 Hb_000484_020--Hb_000312_090 Hb_000505_140 Hb_000505_140 Hb_000484_020--Hb_000505_140 Hb_003126_090 Hb_003126_090 Hb_000484_020--Hb_003126_090 Hb_000163_160 Hb_000163_160 Hb_007432_080--Hb_000163_160 Hb_010180_020 Hb_010180_020 Hb_007432_080--Hb_010180_020 Hb_001279_310 Hb_001279_310 Hb_007432_080--Hb_001279_310 Hb_004306_020 Hb_004306_020 Hb_007432_080--Hb_004306_020 Hb_168054_010 Hb_168054_010 Hb_007432_080--Hb_168054_010 Hb_004204_120 Hb_004204_120 Hb_070986_010--Hb_004204_120 Hb_001584_070 Hb_001584_070 Hb_070986_010--Hb_001584_070 Hb_070986_010--Hb_002105_090 Hb_000798_030 Hb_000798_030 Hb_070986_010--Hb_000798_030 Hb_010883_150 Hb_010883_150 Hb_070986_010--Hb_010883_150 Hb_001257_080 Hb_001257_080 Hb_070986_010--Hb_001257_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.2626 1.83985 7.60074 11.0034 17.5387 17.3617
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.9631 28.8893 6.84229 4.26763 1.9737

CAGE analysis