Hb_116420_050

Information

Type -
Description -
Location Contig116420: 24737-27864
Sequence    

Annotation

kegg
ID rcu:RCOM_0581600
description amino acid binding protein, putative
nr
ID XP_012079440.1
description PREDICTED: ACT domain-containing protein ACR1 [Jatropha curcas]
swissprot
ID Q9FHP1
description ACT domain-containing protein ACR1 OS=Arabidopsis thaliana GN=ACR1 PE=2 SV=1
trembl
ID A0A067K781
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12562 PE=4 SV=1
Gene Ontology
ID GO:0005634
description act domain-containing protein acr1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05091: 26769-27113
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_116420_050 0.0 - - PREDICTED: ACT domain-containing protein ACR1 [Jatropha curcas]
2 Hb_027065_010 0.094988587 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Populus euphratica]
3 Hb_127372_010 0.1214255637 - - hypothetical protein POPTR_0017s06310g [Populus trichocarpa]
4 Hb_003207_220 0.1271554595 transcription factor TF Family: AP2 PREDICTED: dehydration-responsive element-binding protein 1A-like [Jatropha curcas]
5 Hb_000042_020 0.129609294 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
6 Hb_007919_070 0.1307519422 - - hypothetical protein POPTR_0005s28110g [Populus trichocarpa]
7 Hb_000866_430 0.1368007559 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB6 [Jatropha curcas]
8 Hb_002999_150 0.1380573336 - - PREDICTED: probable calcium-binding protein CML45 [Jatropha curcas]
9 Hb_000251_170 0.1426607255 - - leucine-rich repeat transmembrane protein kinase, putative [Ricinus communis]
10 Hb_002435_010 0.1442621884 - - PREDICTED: endochitinase PR4-like [Jatropha curcas]
11 Hb_107174_010 0.1454384266 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_001361_010 0.1495893286 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
13 Hb_004551_010 0.1507155281 - - tryptophan synthase beta chain, putative [Ricinus communis]
14 Hb_001143_200 0.1543046472 transcription factor TF Family: NAC NAC domain protein [Glycine max]
15 Hb_052764_120 0.1580301493 - - PREDICTED: uncharacterized protein LOC103941142 [Pyrus x bretschneideri]
16 Hb_008878_010 0.1592921873 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 2-like [Populus euphratica]
17 Hb_001007_090 0.1594135434 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15 [Jatropha curcas]
18 Hb_000280_100 0.1653749953 - - hypothetical protein JCGZ_13378 [Jatropha curcas]
19 Hb_002267_010 0.1658493423 - - hypothetical protein SORBIDRAFT_01g040370 [Sorghum bicolor]
20 Hb_008115_030 0.168546888 - - Taxadien-5-alpha-ol O-acetyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_116420_050 Hb_116420_050 Hb_027065_010 Hb_027065_010 Hb_116420_050--Hb_027065_010 Hb_127372_010 Hb_127372_010 Hb_116420_050--Hb_127372_010 Hb_003207_220 Hb_003207_220 Hb_116420_050--Hb_003207_220 Hb_000042_020 Hb_000042_020 Hb_116420_050--Hb_000042_020 Hb_007919_070 Hb_007919_070 Hb_116420_050--Hb_007919_070 Hb_000866_430 Hb_000866_430 Hb_116420_050--Hb_000866_430 Hb_027065_010--Hb_127372_010 Hb_001361_010 Hb_001361_010 Hb_027065_010--Hb_001361_010 Hb_027065_010--Hb_003207_220 Hb_027065_010--Hb_000866_430 Hb_027065_010--Hb_000042_020 Hb_127372_010--Hb_001361_010 Hb_000953_180 Hb_000953_180 Hb_127372_010--Hb_000953_180 Hb_127372_010--Hb_003207_220 Hb_000604_080 Hb_000604_080 Hb_127372_010--Hb_000604_080 Hb_002999_150 Hb_002999_150 Hb_003207_220--Hb_002999_150 Hb_052764_120 Hb_052764_120 Hb_003207_220--Hb_052764_120 Hb_002435_010 Hb_002435_010 Hb_003207_220--Hb_002435_010 Hb_002267_010 Hb_002267_010 Hb_003207_220--Hb_002267_010 Hb_107174_010 Hb_107174_010 Hb_003207_220--Hb_107174_010 Hb_010578_020 Hb_010578_020 Hb_003207_220--Hb_010578_020 Hb_001143_200 Hb_001143_200 Hb_000042_020--Hb_001143_200 Hb_000280_100 Hb_000280_100 Hb_000042_020--Hb_000280_100 Hb_007101_250 Hb_007101_250 Hb_000042_020--Hb_007101_250 Hb_000042_020--Hb_127372_010 Hb_000251_170 Hb_000251_170 Hb_007919_070--Hb_000251_170 Hb_014700_020 Hb_014700_020 Hb_007919_070--Hb_014700_020 Hb_007919_070--Hb_000866_430 Hb_003935_050 Hb_003935_050 Hb_007919_070--Hb_003935_050 Hb_000349_170 Hb_000349_170 Hb_007919_070--Hb_000349_170 Hb_000866_430--Hb_000251_170 Hb_001007_090 Hb_001007_090 Hb_000866_430--Hb_001007_090 Hb_155896_010 Hb_155896_010 Hb_000866_430--Hb_155896_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.61161 10.3284 1.1091 0.0133254 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0972705 0.153048 0.0478634 0.101864 0.15987

CAGE analysis