Hb_116436_010

Information

Type -
Description -
Location Contig116436: 1382-3449
Sequence    

Annotation

kegg
ID brp:103857248
description putative ribonuclease H protein At1g65750
nr
ID XP_012441961.1
description PREDICTED: uncharacterized protein LOC105766967 [Gossypium raimondii]
swissprot
ID P92555
description Uncharacterized mitochondrial protein AtMg01250 OS=Arabidopsis thaliana GN=AtMg01250 PE=4 SV=1
trembl
ID Q2QQT9
description Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica GN=LOC_Os12g29890 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_116436_010 0.0 - - PREDICTED: uncharacterized protein LOC105766967 [Gossypium raimondii]
2 Hb_007127_010 0.1342273244 - - PREDICTED: uncharacterized protein LOC105629509 [Jatropha curcas]
3 Hb_000107_130 0.1771425283 - - multicopper oxidase, putative [Ricinus communis]
4 Hb_002890_190 0.1795203191 - - PREDICTED: 22.0 kDa class IV heat shock protein-like [Jatropha curcas]
5 Hb_001104_040 0.1831210613 - - PREDICTED: uncharacterized protein LOC105629509 [Jatropha curcas]
6 Hb_092043_020 0.1845740168 - - PREDICTED: uncharacterized protein LOC105629509 [Jatropha curcas]
7 Hb_002900_060 0.193233944 - - CI small heat shock protein 2 [Prunus salicina]
8 Hb_000891_080 0.1954151149 - - PREDICTED: TMV resistance protein N-like, partial [Populus euphratica]
9 Hb_000060_110 0.1992854637 - - PREDICTED: uncharacterized protein LOC105649714 [Jatropha curcas]
10 Hb_000005_040 0.2133242836 - - PREDICTED: histone H2B.2 [Jatropha curcas]
11 Hb_004529_020 0.2162375579 - - PREDICTED: uncharacterized protein LOC105629509 [Jatropha curcas]
12 Hb_005730_080 0.2177380596 - - PREDICTED: 17.6 kDa class I heat shock protein-like [Solanum lycopersicum]
13 Hb_002595_100 0.2199945948 - - heat-shock protein, putative [Ricinus communis]
14 Hb_013394_090 0.2213818752 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002073_070 0.2322771985 - - PREDICTED: 17.3 kDa class I heat shock protein-like [Jatropha curcas]
16 Hb_005730_100 0.2378669514 - - PREDICTED: 18.2 kDa class I heat shock protein-like [Gossypium raimondii]
17 Hb_002232_200 0.2429190725 - - PREDICTED: sugar carrier protein C-like [Jatropha curcas]
18 Hb_002260_190 0.2451522587 - - -
19 Hb_002022_050 0.2486020038 - - PREDICTED: O-acyltransferase WSD1-like isoform X1 [Populus euphratica]
20 Hb_023528_010 0.2524933092 - - hypothetical protein POPTR_0013s01580g [Populus trichocarpa]

Gene co-expression network

sample Hb_116436_010 Hb_116436_010 Hb_007127_010 Hb_007127_010 Hb_116436_010--Hb_007127_010 Hb_000107_130 Hb_000107_130 Hb_116436_010--Hb_000107_130 Hb_002890_190 Hb_002890_190 Hb_116436_010--Hb_002890_190 Hb_001104_040 Hb_001104_040 Hb_116436_010--Hb_001104_040 Hb_092043_020 Hb_092043_020 Hb_116436_010--Hb_092043_020 Hb_002900_060 Hb_002900_060 Hb_116436_010--Hb_002900_060 Hb_033225_020 Hb_033225_020 Hb_007127_010--Hb_033225_020 Hb_000008_050 Hb_000008_050 Hb_007127_010--Hb_000008_050 Hb_007127_010--Hb_002900_060 Hb_059126_010 Hb_059126_010 Hb_007127_010--Hb_059126_010 Hb_007127_010--Hb_002890_190 Hb_000060_110 Hb_000060_110 Hb_000107_130--Hb_000060_110 Hb_000005_120 Hb_000005_120 Hb_000107_130--Hb_000005_120 Hb_000011_130 Hb_000011_130 Hb_000107_130--Hb_000011_130 Hb_000046_140 Hb_000046_140 Hb_000107_130--Hb_000046_140 Hb_000081_070 Hb_000081_070 Hb_000107_130--Hb_000081_070 Hb_005730_100 Hb_005730_100 Hb_002890_190--Hb_005730_100 Hb_000891_080 Hb_000891_080 Hb_002890_190--Hb_000891_080 Hb_029980_010 Hb_029980_010 Hb_002890_190--Hb_029980_010 Hb_007382_020 Hb_007382_020 Hb_002890_190--Hb_007382_020 Hb_002890_190--Hb_000107_130 Hb_001279_230 Hb_001279_230 Hb_001104_040--Hb_001279_230 Hb_004529_020 Hb_004529_020 Hb_001104_040--Hb_004529_020 Hb_003647_120 Hb_003647_120 Hb_001104_040--Hb_003647_120 Hb_001104_040--Hb_092043_020 Hb_048207_010 Hb_048207_010 Hb_001104_040--Hb_048207_010 Hb_092043_020--Hb_004529_020 Hb_023528_010 Hb_023528_010 Hb_092043_020--Hb_023528_010 Hb_003793_050 Hb_003793_050 Hb_092043_020--Hb_003793_050 Hb_010555_020 Hb_010555_020 Hb_092043_020--Hb_010555_020 Hb_000005_040 Hb_000005_040 Hb_002900_060--Hb_000005_040 Hb_002595_100 Hb_002595_100 Hb_002900_060--Hb_002595_100 Hb_002260_190 Hb_002260_190 Hb_002900_060--Hb_002260_190 Hb_002022_050 Hb_002022_050 Hb_002900_060--Hb_002022_050 Hb_002073_070 Hb_002073_070 Hb_002900_060--Hb_002073_070 Hb_002232_200 Hb_002232_200 Hb_002900_060--Hb_002232_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0442568 0.0985051 0 0 1.32616 0.0730686
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis