Hb_116478_010

Information

Type transcription factor
Description TF Family: ERF
Location Contig116478: 2021-2807
Sequence    

Annotation

kegg
ID rcu:RCOM_0471150
description DNA binding protein, putative
nr
ID XP_012067539.1
description PREDICTED: ethylene-responsive transcription factor ERF003-like [Jatropha curcas]
swissprot
ID Q94AW5
description Ethylene-responsive transcription factor ERF003 OS=Arabidopsis thaliana GN=ERF003 PE=2 SV=1
trembl
ID A0A067LD25
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_27017 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ethylene-responsive transcription factor erf003-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_116478_010 0.0 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF003-like [Jatropha curcas]
2 Hb_159015_010 0.0988688402 - - receptor protein kinase, putative [Ricinus communis]
3 Hb_005064_040 0.1183590807 - - hypothetical protein POPTR_0008s02680g [Populus trichocarpa]
4 Hb_002182_050 0.1274770515 - - hypothetical protein CICLE_v10022654mg [Citrus clementina]
5 Hb_000497_120 0.1293628278 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000032_560 0.1321612965 - - hypothetical protein JCGZ_15037 [Jatropha curcas]
7 Hb_006120_010 0.138050373 - - invertase inhibitor [Manihot esculenta]
8 Hb_018133_110 0.1391765421 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
9 Hb_003058_180 0.1487000655 transcription factor TF Family: HSF hypothetical protein POPTR_0001s28040g [Populus trichocarpa]
10 Hb_000487_140 0.1487747321 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
11 Hb_025254_020 0.1489214615 - - PREDICTED: formate dehydrogenase, mitochondrial [Vitis vinifera]
12 Hb_000580_070 0.1500958116 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
13 Hb_000081_020 0.1529048723 - - PREDICTED: protein NRT1/ PTR FAMILY 1.1-like [Camelina sativa]
14 Hb_011452_020 0.1537423685 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 4 [Jatropha curcas]
15 Hb_135811_040 0.1549989487 - - conserved hypothetical protein [Ricinus communis]
16 Hb_188923_010 0.1566309308 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
17 Hb_031340_030 0.1574907487 - - PREDICTED: L-type lectin-domain containing receptor kinase IV.1 [Jatropha curcas]
18 Hb_000487_240 0.1576256455 - - PREDICTED: CYSTM1 family protein B [Cucumis melo]
19 Hb_001105_200 0.1596902823 - - catalytic, putative [Ricinus communis]
20 Hb_000077_450 0.1600044819 - - o-methyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_116478_010 Hb_116478_010 Hb_159015_010 Hb_159015_010 Hb_116478_010--Hb_159015_010 Hb_005064_040 Hb_005064_040 Hb_116478_010--Hb_005064_040 Hb_002182_050 Hb_002182_050 Hb_116478_010--Hb_002182_050 Hb_000497_120 Hb_000497_120 Hb_116478_010--Hb_000497_120 Hb_000032_560 Hb_000032_560 Hb_116478_010--Hb_000032_560 Hb_006120_010 Hb_006120_010 Hb_116478_010--Hb_006120_010 Hb_159015_010--Hb_000497_120 Hb_159015_010--Hb_005064_040 Hb_159015_010--Hb_002182_050 Hb_000487_240 Hb_000487_240 Hb_159015_010--Hb_000487_240 Hb_000911_050 Hb_000911_050 Hb_159015_010--Hb_000911_050 Hb_000081_020 Hb_000081_020 Hb_005064_040--Hb_000081_020 Hb_005064_040--Hb_000497_120 Hb_031340_030 Hb_031340_030 Hb_005064_040--Hb_031340_030 Hb_000539_080 Hb_000539_080 Hb_005064_040--Hb_000539_080 Hb_000140_260 Hb_000140_260 Hb_005064_040--Hb_000140_260 Hb_002182_050--Hb_000487_240 Hb_018133_110 Hb_018133_110 Hb_002182_050--Hb_018133_110 Hb_002182_050--Hb_000032_560 Hb_002182_050--Hb_005064_040 Hb_000497_120--Hb_031340_030 Hb_027141_010 Hb_027141_010 Hb_000497_120--Hb_027141_010 Hb_000497_120--Hb_000140_260 Hb_000205_210 Hb_000205_210 Hb_000497_120--Hb_000205_210 Hb_000032_560--Hb_018133_110 Hb_000580_070 Hb_000580_070 Hb_000032_560--Hb_000580_070 Hb_118707_020 Hb_118707_020 Hb_000032_560--Hb_118707_020 Hb_002597_010 Hb_002597_010 Hb_000032_560--Hb_002597_010 Hb_135811_040 Hb_135811_040 Hb_000032_560--Hb_135811_040 Hb_000276_030 Hb_000276_030 Hb_000032_560--Hb_000276_030 Hb_003058_180 Hb_003058_180 Hb_006120_010--Hb_003058_180 Hb_046191_010 Hb_046191_010 Hb_006120_010--Hb_046191_010 Hb_002499_020 Hb_002499_020 Hb_006120_010--Hb_002499_020 Hb_000230_160 Hb_000230_160 Hb_006120_010--Hb_000230_160 Hb_000077_450 Hb_000077_450 Hb_006120_010--Hb_000077_450 Hb_188923_010 Hb_188923_010 Hb_006120_010--Hb_188923_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.296245 6.0294 0.430879 13.6244 0.0990422 0.306573
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.237224 0.46599 0 42.881 2.12447

CAGE analysis