Hb_116486_010

Information

Type -
Description -
Location Contig116486: 14341-15403
Sequence    

Annotation

kegg
ID rcu:RCOM_1252910
description mads box protein, putative
nr
ID AHH28255.1
description MADS-box transcription factor, partial [Sapria himalayana]
swissprot
ID Q40872
description Floral homeotic protein AGAMOUS OS=Panax ginseng GN=AG2 PE=2 SV=1
trembl
ID A0A023JBJ4
description MADS-box transcription factor (Fragment) OS=Sapria himalayana PE=2 SV=1
Gene Ontology
ID GO:0005488
description mads-box transcription partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05099: 14941-15440
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_116486_010 0.0 - - MADS-box transcription factor, partial [Sapria himalayana]
2 Hb_005694_140 0.0062323761 - - protein with unknown function [Ricinus communis]
3 Hb_002105_070 0.0189488324 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000629_140 0.0575403794 - - hypothetical protein SORBIDRAFT_04g013083 [Sorghum bicolor]
5 Hb_000048_120 0.0811512682 - - PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g37970 [Jatropha curcas]
6 Hb_125152_010 0.0824593937 - - Ankyrin repeat family protein, putative [Theobroma cacao]
7 Hb_000027_020 0.0845469984 - - Nonspecific lipid-transfer protein, putative [Ricinus communis]
8 Hb_002853_010 0.0901909643 - - conserved hypothetical protein [Ricinus communis]
9 Hb_007441_320 0.0979889215 - - PREDICTED: putative invertase inhibitor [Jatropha curcas]
10 Hb_000479_100 0.0983846582 - - Alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic [Gossypium arboreum]
11 Hb_005699_100 0.1010087054 - - hypothetical protein POPTR_0013s12390g [Populus trichocarpa]
12 Hb_137821_010 0.104790539 - - hypothetical protein CISIN_1g034189mg [Citrus sinensis]
13 Hb_000527_090 0.1091781692 - - serine carboxypeptidase, putative [Ricinus communis]
14 Hb_120496_010 0.1114479905 - - PREDICTED: CSC1-like protein At1g32090 [Cicer arietinum]
15 Hb_106677_010 0.1125679673 - - 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase, putative [Ricinus communis]
16 Hb_118941_010 0.1172005034 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
17 Hb_001634_070 0.1173546046 - - conserved hypothetical protein [Ricinus communis]
18 Hb_009501_010 0.1196638525 - - Disease resistance protein RPS5, putative [Ricinus communis]
19 Hb_000002_190 0.1214063302 transcription factor TF Family: ERF Ethylene-responsive transcription factor [Morus notabilis]
20 Hb_000003_520 0.1214063302 - - PREDICTED: cell division cycle protein 27 homolog B [Jatropha curcas]

Gene co-expression network

sample Hb_116486_010 Hb_116486_010 Hb_005694_140 Hb_005694_140 Hb_116486_010--Hb_005694_140 Hb_002105_070 Hb_002105_070 Hb_116486_010--Hb_002105_070 Hb_000629_140 Hb_000629_140 Hb_116486_010--Hb_000629_140 Hb_000048_120 Hb_000048_120 Hb_116486_010--Hb_000048_120 Hb_125152_010 Hb_125152_010 Hb_116486_010--Hb_125152_010 Hb_000027_020 Hb_000027_020 Hb_116486_010--Hb_000027_020 Hb_005694_140--Hb_002105_070 Hb_005694_140--Hb_000629_140 Hb_005694_140--Hb_000048_120 Hb_005694_140--Hb_125152_010 Hb_005694_140--Hb_000027_020 Hb_002105_070--Hb_000027_020 Hb_002105_070--Hb_000629_140 Hb_005699_100 Hb_005699_100 Hb_002105_070--Hb_005699_100 Hb_002853_010 Hb_002853_010 Hb_002105_070--Hb_002853_010 Hb_000629_140--Hb_000048_120 Hb_000629_140--Hb_125152_010 Hb_009501_010 Hb_009501_010 Hb_000629_140--Hb_009501_010 Hb_137821_010 Hb_137821_010 Hb_000629_140--Hb_137821_010 Hb_000048_120--Hb_125152_010 Hb_000048_120--Hb_009501_010 Hb_001998_160 Hb_001998_160 Hb_000048_120--Hb_001998_160 Hb_000048_120--Hb_137821_010 Hb_002217_480 Hb_002217_480 Hb_000048_120--Hb_002217_480 Hb_125152_010--Hb_009501_010 Hb_125152_010--Hb_001998_160 Hb_125152_010--Hb_002217_480 Hb_125152_010--Hb_137821_010 Hb_000027_020--Hb_005699_100 Hb_118941_010 Hb_118941_010 Hb_000027_020--Hb_118941_010 Hb_000645_040 Hb_000645_040 Hb_000027_020--Hb_000645_040 Hb_001634_070 Hb_001634_070 Hb_000027_020--Hb_001634_070 Hb_001322_200 Hb_001322_200 Hb_000027_020--Hb_001322_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.081495 0 2.71253 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis