Hb_116596_010

Information

Type -
Description -
Location Contig116596: 220-474
Sequence    

Annotation

kegg
ID cit:102628859
description probable receptor-like protein kinase At5g47070-like
nr
ID XP_006485632.1
description PREDICTED: probable receptor-like protein kinase At5g47070-like isoform X1 [Citrus sinensis]
swissprot
ID Q9LTC0
description Probable receptor-like protein kinase At5g47070 OS=Arabidopsis thaliana GN=At5g47070 PE=1 SV=1
trembl
ID V4TIX5
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10031608mg PE=4 SV=1
Gene Ontology
ID GO:0005524
description probable receptor-like protein kinase at5g47070

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_116596_010 0.0 - - PREDICTED: probable receptor-like protein kinase At5g47070-like isoform X1 [Citrus sinensis]
2 Hb_002508_010 0.1253742686 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
3 Hb_153054_010 0.1384320952 - - PREDICTED: metal tolerance protein 11-like [Populus euphratica]
4 Hb_000176_120 0.1405188066 - - seryl-tRNA synthetase, putative [Ricinus communis]
5 Hb_152554_010 0.1438022589 - - hypothetical protein B456_008G095800, partial [Gossypium raimondii]
6 Hb_005367_010 0.1449739202 - - -
7 Hb_002217_310 0.1544592299 - - PREDICTED: ER membrane protein complex subunit 6 [Jatropha curcas]
8 Hb_000045_070 0.1552538345 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003861_040 0.1580290725 - - hypothetical protein JCGZ_16325 [Jatropha curcas]
10 Hb_041392_010 0.1649539352 - - PREDICTED: DNA-binding protein BIN4 [Jatropha curcas]
11 Hb_000183_040 0.1662175266 - - mannose-1-phosphate guanyltransferase, putative [Ricinus communis]
12 Hb_025814_010 0.1683183239 - - hypothetical protein PRUPE_ppa015585mg [Prunus persica]
13 Hb_006252_010 0.1691877519 - - PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 isoform X1 [Jatropha curcas]
14 Hb_150204_010 0.1696529365 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
15 Hb_006487_060 0.1709240549 - - Defective in cullin neddylation protein, putative [Ricinus communis]
16 Hb_010504_030 0.1717109019 - - calmodulin homolog {EST} [Brassica napus, Naehan, root, Peptide Partial, 53 aa]
17 Hb_000069_160 0.1731569662 - - -
18 Hb_000812_040 0.173171168 - - zinc finger family protein [Populus trichocarpa]
19 Hb_005054_070 0.1743079589 - - unnamed protein product [Vitis vinifera]
20 Hb_150360_010 0.1743109936 - - hypothetical protein JCGZ_16890 [Jatropha curcas]

Gene co-expression network

sample Hb_116596_010 Hb_116596_010 Hb_002508_010 Hb_002508_010 Hb_116596_010--Hb_002508_010 Hb_153054_010 Hb_153054_010 Hb_116596_010--Hb_153054_010 Hb_000176_120 Hb_000176_120 Hb_116596_010--Hb_000176_120 Hb_152554_010 Hb_152554_010 Hb_116596_010--Hb_152554_010 Hb_005367_010 Hb_005367_010 Hb_116596_010--Hb_005367_010 Hb_002217_310 Hb_002217_310 Hb_116596_010--Hb_002217_310 Hb_041392_010 Hb_041392_010 Hb_002508_010--Hb_041392_010 Hb_106411_010 Hb_106411_010 Hb_002508_010--Hb_106411_010 Hb_001767_120 Hb_001767_120 Hb_002508_010--Hb_001767_120 Hb_150204_010 Hb_150204_010 Hb_002508_010--Hb_150204_010 Hb_000025_050 Hb_000025_050 Hb_002508_010--Hb_000025_050 Hb_153054_010--Hb_002217_310 Hb_000849_070 Hb_000849_070 Hb_153054_010--Hb_000849_070 Hb_000183_040 Hb_000183_040 Hb_153054_010--Hb_000183_040 Hb_005539_290 Hb_005539_290 Hb_153054_010--Hb_005539_290 Hb_050455_010 Hb_050455_010 Hb_153054_010--Hb_050455_010 Hb_000069_160 Hb_000069_160 Hb_153054_010--Hb_000069_160 Hb_005054_070 Hb_005054_070 Hb_000176_120--Hb_005054_070 Hb_006487_060 Hb_006487_060 Hb_000176_120--Hb_006487_060 Hb_000176_120--Hb_152554_010 Hb_000001_040 Hb_000001_040 Hb_000176_120--Hb_000001_040 Hb_010504_030 Hb_010504_030 Hb_000176_120--Hb_010504_030 Hb_136731_010 Hb_136731_010 Hb_000176_120--Hb_136731_010 Hb_007188_020 Hb_007188_020 Hb_152554_010--Hb_007188_020 Hb_152554_010--Hb_006487_060 Hb_000812_040 Hb_000812_040 Hb_152554_010--Hb_000812_040 Hb_003861_040 Hb_003861_040 Hb_152554_010--Hb_003861_040 Hb_001377_180 Hb_001377_180 Hb_152554_010--Hb_001377_180 Hb_005367_010--Hb_001377_180 Hb_005367_010--Hb_152554_010 Hb_005367_010--Hb_136731_010 Hb_007441_270 Hb_007441_270 Hb_005367_010--Hb_007441_270 Hb_005367_010--Hb_003861_040 Hb_005367_010--Hb_000176_120 Hb_002217_310--Hb_000069_160 Hb_141131_010 Hb_141131_010 Hb_002217_310--Hb_141131_010 Hb_002217_310--Hb_000849_070 Hb_001124_210 Hb_001124_210 Hb_002217_310--Hb_001124_210 Hb_021409_020 Hb_021409_020 Hb_002217_310--Hb_021409_020 Hb_003847_080 Hb_003847_080 Hb_002217_310--Hb_003847_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.5722 2.4658 3.44587 15.261 14.191 32.972
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.1827 10.2622 7.82045 6.55998 0

CAGE analysis