Hb_116608_010

Information

Type transcription factor
Description TF Family: NF-YC
Location Contig116608: 1794-2219
Sequence    

Annotation

kegg
ID rcu:RCOM_1080560
description DNA binding protein, putative
nr
ID XP_002514923.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q54DA1
description Dr1-associated corepressor homolog OS=Dictyostelium discoideum GN=drap1 PE=3 SV=1
trembl
ID B9RMF4
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_1080560 PE=4 SV=1
Gene Ontology
ID GO:0005634
description chromatin accessibility complex protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05109: 1910-2315
cDNA
(Sanger)
(ID:Location)		 009_D23.ab1: 1917-2315 , 009_P14.ab1: 1914-2315 , 024_L05.ab1: 1912-2315

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_116608_010 0.0 transcription factor TF Family: NF-YC DNA binding protein, putative [Ricinus communis]
2 Hb_004052_050 0.1001432621 - - PREDICTED: uncharacterized protein LOC105640640 [Jatropha curcas]
3 Hb_000696_290 0.1004071619 - - PREDICTED: UPF0664 stress-induced protein C29B12.11c [Jatropha curcas]
4 Hb_153544_010 0.1006437988 - - PREDICTED: coiled-coil domain-containing protein 130-like [Populus euphratica]
5 Hb_000172_640 0.1127903967 - - hypothetical protein POPTR_0007s06250g [Populus trichocarpa]
6 Hb_000331_470 0.1132646454 - - PREDICTED: uncharacterized protein LOC105136689 [Populus euphratica]
7 Hb_011671_100 0.115189061 - - 60S ribosomal protein L15 [Populus trichocarpa]
8 Hb_001247_100 0.1186965769 - - PREDICTED: pyroglutamyl-peptidase 1-like protein [Jatropha curcas]
9 Hb_000327_380 0.1190183107 - - hypothetical protein JCGZ_06621 [Jatropha curcas]
10 Hb_000327_230 0.1198298323 - - PREDICTED: nitrilase-like protein 2 isoform X1 [Jatropha curcas]
11 Hb_030736_080 0.1204633501 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000417_040 0.1223600067 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
13 Hb_003787_010 0.122596881 - - PREDICTED: 40S ribosomal protein S3-3-like [Phoenix dactylifera]
14 Hb_000406_080 0.1232220516 - - PREDICTED: trafficking protein particle complex subunit 6B [Jatropha curcas]
15 Hb_000329_110 0.1240582799 - - PREDICTED: uncharacterized protein LOC105643142 [Jatropha curcas]
16 Hb_000805_240 0.1244038718 - - PREDICTED: uncharacterized protein C20orf24 homolog [Jatropha curcas]
17 Hb_018124_010 0.1245801796 - - PREDICTED: mitochondrial uncoupling protein 1 isoform X2 [Jatropha curcas]
18 Hb_000701_100 0.1258369483 - - PREDICTED: ribose-phosphate pyrophosphokinase 1 [Jatropha curcas]
19 Hb_000115_220 0.1265875118 - - hypothetical protein CISIN_1g0379742mg, partial [Citrus sinensis]
20 Hb_004994_140 0.1267952934 - - PREDICTED: digalactosyldiacylglycerol synthase 2, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_116608_010 Hb_116608_010 Hb_004052_050 Hb_004052_050 Hb_116608_010--Hb_004052_050 Hb_000696_290 Hb_000696_290 Hb_116608_010--Hb_000696_290 Hb_153544_010 Hb_153544_010 Hb_116608_010--Hb_153544_010 Hb_000172_640 Hb_000172_640 Hb_116608_010--Hb_000172_640 Hb_000331_470 Hb_000331_470 Hb_116608_010--Hb_000331_470 Hb_011671_100 Hb_011671_100 Hb_116608_010--Hb_011671_100 Hb_009486_020 Hb_009486_020 Hb_004052_050--Hb_009486_020 Hb_018124_010 Hb_018124_010 Hb_004052_050--Hb_018124_010 Hb_000805_240 Hb_000805_240 Hb_004052_050--Hb_000805_240 Hb_001247_100 Hb_001247_100 Hb_004052_050--Hb_001247_100 Hb_152784_010 Hb_152784_010 Hb_004052_050--Hb_152784_010 Hb_007192_100 Hb_007192_100 Hb_004052_050--Hb_007192_100 Hb_004157_040 Hb_004157_040 Hb_000696_290--Hb_004157_040 Hb_006256_030 Hb_006256_030 Hb_000696_290--Hb_006256_030 Hb_000696_290--Hb_011671_100 Hb_004324_090 Hb_004324_090 Hb_000696_290--Hb_004324_090 Hb_000115_220 Hb_000115_220 Hb_000696_290--Hb_000115_220 Hb_004871_020 Hb_004871_020 Hb_153544_010--Hb_004871_020 Hb_000030_290 Hb_000030_290 Hb_153544_010--Hb_000030_290 Hb_000317_070 Hb_000317_070 Hb_153544_010--Hb_000317_070 Hb_000417_360 Hb_000417_360 Hb_153544_010--Hb_000417_360 Hb_091433_020 Hb_091433_020 Hb_153544_010--Hb_091433_020 Hb_143496_010 Hb_143496_010 Hb_153544_010--Hb_143496_010 Hb_005365_030 Hb_005365_030 Hb_000172_640--Hb_005365_030 Hb_124953_020 Hb_124953_020 Hb_000172_640--Hb_124953_020 Hb_004800_060 Hb_004800_060 Hb_000172_640--Hb_004800_060 Hb_002192_010 Hb_002192_010 Hb_000172_640--Hb_002192_010 Hb_027472_040 Hb_027472_040 Hb_000172_640--Hb_027472_040 Hb_002078_140 Hb_002078_140 Hb_000172_640--Hb_002078_140 Hb_000525_020 Hb_000525_020 Hb_000331_470--Hb_000525_020 Hb_003787_010 Hb_003787_010 Hb_000331_470--Hb_003787_010 Hb_006153_110 Hb_006153_110 Hb_000331_470--Hb_006153_110 Hb_001863_430 Hb_001863_430 Hb_000331_470--Hb_001863_430 Hb_010098_050 Hb_010098_050 Hb_000331_470--Hb_010098_050 Hb_000001_060 Hb_000001_060 Hb_000331_470--Hb_000001_060 Hb_001691_140 Hb_001691_140 Hb_011671_100--Hb_001691_140 Hb_011671_100--Hb_003787_010 Hb_000172_320 Hb_000172_320 Hb_011671_100--Hb_000172_320 Hb_015279_010 Hb_015279_010 Hb_011671_100--Hb_015279_010 Hb_004767_080 Hb_004767_080 Hb_011671_100--Hb_004767_080 Hb_011671_100--Hb_000417_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.97728 3.58099 1.91095 4.67241 2.51054 1.78711
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.37544 7.92868 3.40179 2.82975 0.997788

CAGE analysis