Hb_116635_010

Information

Type -
Description -
Location Contig116635: 1-1260
Sequence    

Annotation

kegg
ID pop:POPTR_0013s02830g
description hypothetical protein
nr
ID XP_006375780.1
description hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FWB6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s02830g PE=4 SV=1
Gene Ontology
ID GO:0000166
description disease resistance gene nbs-lrr family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_116635_010 0.0 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
2 Hb_138575_010 0.1535074816 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
3 Hb_042553_010 0.1593959103 - - PREDICTED: glutathione S-transferase T1-like [Jatropha curcas]
4 Hb_003893_020 0.1601932996 transcription factor TF Family: MIKC PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X2 [Jatropha curcas]
5 Hb_006911_060 0.1660590203 - - hypothetical protein CISIN_1g000594mg [Citrus sinensis]
6 Hb_000940_020 0.1667196968 - - hypothetical protein POPTR_0004s17500g [Populus trichocarpa]
7 Hb_012702_010 0.168736186 - - PREDICTED: TMV resistance protein N-like isoform X4 [Vitis vinifera]
8 Hb_002701_140 0.1760398168 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
9 Hb_007137_030 0.179586886 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.3-like [Jatropha curcas]
10 Hb_010080_020 0.1966730288 - - PREDICTED: uncharacterized protein LOC105635249 [Jatropha curcas]
11 Hb_011054_030 0.1992371118 - - PREDICTED: uncharacterized protein LOC103324687 [Prunus mume]
12 Hb_001608_030 0.1997121107 - - Protein NSP-INTERACTING KINASE 1 [Glycine soja]
13 Hb_001248_110 0.2005285898 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
14 Hb_001504_270 0.2009064494 - - PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
15 Hb_012760_180 0.2010204083 - - Basic-leucine zipper transcription factor family protein, putative [Theobroma cacao]
16 Hb_048653_020 0.2010653253 - - ankyrin repeat-containing protein, putative [Ricinus communis]
17 Hb_102100_010 0.2029075766 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
18 Hb_019961_010 0.2048021392 - - hypothetical protein POPTR_0017s11350g [Populus trichocarpa]
19 Hb_004161_010 0.2048933825 - - hypothetical protein JCGZ_21278 [Jatropha curcas]
20 Hb_001529_020 0.2069403281 - - ankyrin repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_116635_010 Hb_116635_010 Hb_138575_010 Hb_138575_010 Hb_116635_010--Hb_138575_010 Hb_042553_010 Hb_042553_010 Hb_116635_010--Hb_042553_010 Hb_003893_020 Hb_003893_020 Hb_116635_010--Hb_003893_020 Hb_006911_060 Hb_006911_060 Hb_116635_010--Hb_006911_060 Hb_000940_020 Hb_000940_020 Hb_116635_010--Hb_000940_020 Hb_012702_010 Hb_012702_010 Hb_116635_010--Hb_012702_010 Hb_048653_020 Hb_048653_020 Hb_138575_010--Hb_048653_020 Hb_102100_010 Hb_102100_010 Hb_138575_010--Hb_102100_010 Hb_009897_020 Hb_009897_020 Hb_138575_010--Hb_009897_020 Hb_000015_180 Hb_000015_180 Hb_138575_010--Hb_000015_180 Hb_001504_270 Hb_001504_270 Hb_138575_010--Hb_001504_270 Hb_007137_030 Hb_007137_030 Hb_042553_010--Hb_007137_030 Hb_001248_110 Hb_001248_110 Hb_042553_010--Hb_001248_110 Hb_001608_030 Hb_001608_030 Hb_042553_010--Hb_001608_030 Hb_042553_010--Hb_006911_060 Hb_183539_010 Hb_183539_010 Hb_042553_010--Hb_183539_010 Hb_107495_050 Hb_107495_050 Hb_003893_020--Hb_107495_050 Hb_001922_160 Hb_001922_160 Hb_003893_020--Hb_001922_160 Hb_002701_140 Hb_002701_140 Hb_003893_020--Hb_002701_140 Hb_005588_140 Hb_005588_140 Hb_003893_020--Hb_005588_140 Hb_127819_010 Hb_127819_010 Hb_003893_020--Hb_127819_010 Hb_006911_060--Hb_001504_270 Hb_000397_090 Hb_000397_090 Hb_006911_060--Hb_000397_090 Hb_006052_040 Hb_006052_040 Hb_006911_060--Hb_006052_040 Hb_006911_060--Hb_012702_010 Hb_009247_020 Hb_009247_020 Hb_006911_060--Hb_009247_020 Hb_006911_060--Hb_183539_010 Hb_000345_190 Hb_000345_190 Hb_000940_020--Hb_000345_190 Hb_000940_020--Hb_002701_140 Hb_001810_010 Hb_001810_010 Hb_000940_020--Hb_001810_010 Hb_004586_380 Hb_004586_380 Hb_000940_020--Hb_004586_380 Hb_029866_140 Hb_029866_140 Hb_000940_020--Hb_029866_140 Hb_006351_080 Hb_006351_080 Hb_000940_020--Hb_006351_080 Hb_019961_010 Hb_019961_010 Hb_012702_010--Hb_019961_010 Hb_002272_140 Hb_002272_140 Hb_012702_010--Hb_002272_140 Hb_138628_010 Hb_138628_010 Hb_012702_010--Hb_138628_010 Hb_000172_300 Hb_000172_300 Hb_012702_010--Hb_000172_300 Hb_004531_010 Hb_004531_010 Hb_012702_010--Hb_004531_010 Hb_011054_030 Hb_011054_030 Hb_012702_010--Hb_011054_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.162231 4.12973 0.196302 0.490433 0.157922 0.240325
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.653547 0.0729022

CAGE analysis