Hb_116638_010

Information

Type -
Description -
Location Contig116638: 346-549
Sequence    

Annotation

kegg
ID rcu:RCOM_1478740
description hypothetical protein
nr
ID XP_002526056.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q1PFH7
description Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana GN=At1g62350 PE=2 SV=1
trembl
ID B9SJ87
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1478740 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_116638_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_015354_010 0.1457432181 - - PREDICTED: B2 protein [Jatropha curcas]
3 Hb_003376_070 0.1537864648 - - hypothetical protein B456_009G419800 [Gossypium raimondii]
4 Hb_001052_040 0.1560307899 - - Ferredoxin-3, chloroplast precursor, putative [Ricinus communis]
5 Hb_159307_010 0.1595799304 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
6 Hb_118720_010 0.1641528716 - - PREDICTED: uncharacterized protein LOC105634948 [Jatropha curcas]
7 Hb_002742_080 0.1678007248 - - unknown [Populus trichocarpa]
8 Hb_002783_010 0.1802023846 - - PREDICTED: uncharacterized protein LOC105635318 [Jatropha curcas]
9 Hb_003038_220 0.1802299297 - - eukaryotic translation initiation factor 2 gamma subunit, putative [Ricinus communis]
10 Hb_002411_130 0.1804008854 - - PREDICTED: cytosolic sulfotransferase 15-like [Populus euphratica]
11 Hb_000152_670 0.1823588117 - - hypothetical protein VITISV_037603 [Vitis vinifera]
12 Hb_003157_030 0.1855406684 - - PREDICTED: exocyst complex component EXO70A1-like [Nicotiana sylvestris]
13 Hb_002837_110 0.1871074 - - PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase-like 2, mitochondrial [Jatropha curcas]
14 Hb_001301_230 0.1871635583 - - PREDICTED: uncharacterized protein LOC105632949 isoform X2 [Jatropha curcas]
15 Hb_001691_150 0.190347472 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 24 [Jatropha curcas]
16 Hb_169329_010 0.1916686953 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X2 [Jatropha curcas]
17 Hb_002084_010 0.1918601321 - - hypothetical protein VITISV_017990 [Vitis vinifera]
18 Hb_128376_010 0.1923738273 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_030328_010 0.1933423905 - - hypothetical protein CICLE_v10015936mg [Citrus clementina]
20 Hb_058381_010 0.1950076896 - - hypothetical protein JCGZ_13280 [Jatropha curcas]

Gene co-expression network

sample Hb_116638_010 Hb_116638_010 Hb_015354_010 Hb_015354_010 Hb_116638_010--Hb_015354_010 Hb_003376_070 Hb_003376_070 Hb_116638_010--Hb_003376_070 Hb_001052_040 Hb_001052_040 Hb_116638_010--Hb_001052_040 Hb_159307_010 Hb_159307_010 Hb_116638_010--Hb_159307_010 Hb_118720_010 Hb_118720_010 Hb_116638_010--Hb_118720_010 Hb_002742_080 Hb_002742_080 Hb_116638_010--Hb_002742_080 Hb_015354_010--Hb_001052_040 Hb_003038_220 Hb_003038_220 Hb_015354_010--Hb_003038_220 Hb_173178_020 Hb_173178_020 Hb_015354_010--Hb_173178_020 Hb_000152_670 Hb_000152_670 Hb_015354_010--Hb_000152_670 Hb_142751_010 Hb_142751_010 Hb_015354_010--Hb_142751_010 Hb_015354_010--Hb_002742_080 Hb_003157_030 Hb_003157_030 Hb_003376_070--Hb_003157_030 Hb_003492_010 Hb_003492_010 Hb_003376_070--Hb_003492_010 Hb_002411_130 Hb_002411_130 Hb_003376_070--Hb_002411_130 Hb_009119_030 Hb_009119_030 Hb_003376_070--Hb_009119_030 Hb_002742_070 Hb_002742_070 Hb_003376_070--Hb_002742_070 Hb_130134_030 Hb_130134_030 Hb_003376_070--Hb_130134_030 Hb_000886_060 Hb_000886_060 Hb_001052_040--Hb_000886_060 Hb_001052_040--Hb_000152_670 Hb_001052_040--Hb_002742_080 Hb_001910_020 Hb_001910_020 Hb_001052_040--Hb_001910_020 Hb_001052_040--Hb_173178_020 Hb_159307_010--Hb_130134_030 Hb_159307_010--Hb_003376_070 Hb_001158_180 Hb_001158_180 Hb_159307_010--Hb_001158_180 Hb_000307_250 Hb_000307_250 Hb_159307_010--Hb_000307_250 Hb_018118_020 Hb_018118_020 Hb_159307_010--Hb_018118_020 Hb_002783_010 Hb_002783_010 Hb_118720_010--Hb_002783_010 Hb_000179_180 Hb_000179_180 Hb_118720_010--Hb_000179_180 Hb_118720_010--Hb_002742_080 Hb_000059_200 Hb_000059_200 Hb_118720_010--Hb_000059_200 Hb_001493_080 Hb_001493_080 Hb_118720_010--Hb_001493_080 Hb_005333_030 Hb_005333_030 Hb_002742_080--Hb_005333_030 Hb_003710_040 Hb_003710_040 Hb_002742_080--Hb_003710_040 Hb_000261_290 Hb_000261_290 Hb_002742_080--Hb_000261_290 Hb_128376_010 Hb_128376_010 Hb_002742_080--Hb_128376_010 Hb_002320_070 Hb_002320_070 Hb_002742_080--Hb_002320_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
131.561 258.337 65.1238 131.52 112.514 405.94
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.8072 60.5718 29.6462 39.6982 14.6984

CAGE analysis