Hb_116679_010

Information

Type -
Description -
Location Contig116679: 229-776
Sequence    

Annotation

kegg
ID vvi:100260944
description transcription factor bHLH110
nr
ID XP_002281118.2
description PREDICTED: transcription factor bHLH110 isoform X2 [Vitis vinifera]
swissprot
ID Q9SFZ3
description Transcription factor bHLH110 OS=Arabidopsis thaliana GN=BHLH110 PE=2 SV=2
trembl
ID E0CQH4
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g12970 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor bhlh110 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_116679_010 0.0 - - PREDICTED: transcription factor bHLH110 isoform X2 [Vitis vinifera]
2 Hb_011689_090 0.0323324629 - - PREDICTED: uncharacterized protein LOC105631865 [Jatropha curcas]
3 Hb_170597_010 0.0503121867 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
4 Hb_006275_080 0.0604124989 - - PREDICTED: protein WALLS ARE THIN 1 [Jatropha curcas]
5 Hb_003607_040 0.0626233924 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
6 Hb_006452_080 0.0717236904 - - Nodulin, putative [Ricinus communis]
7 Hb_000027_010 0.0837240983 - - -
8 Hb_007472_060 0.0840743506 - - PREDICTED: ABC transporter G family member 14-like isoform X1 [Jatropha curcas]
9 Hb_001104_290 0.0866960083 transcription factor TF Family: ERF Dehydration-responsive element-binding protein 1B, putative [Theobroma cacao]
10 Hb_000363_100 0.0878903473 - - -
11 Hb_007441_320 0.0935959745 - - PREDICTED: putative invertase inhibitor [Jatropha curcas]
12 Hb_000527_090 0.0950106755 - - serine carboxypeptidase, putative [Ricinus communis]
13 Hb_003090_250 0.0962674105 - - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein isoform 1 [Theobroma cacao]
14 Hb_000358_070 0.098299377 - - hypothetical protein POPTR_0003s01410g [Populus trichocarpa]
15 Hb_029508_050 0.0995693769 - - PREDICTED: mechanosensitive ion channel protein 10-like isoform X2 [Musa acuminata subsp. malaccensis]
16 Hb_000816_170 0.1009015284 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 15 [Jatropha curcas]
17 Hb_002232_340 0.1016517343 - - Sodium transporter hkt1-like protein, putative [Theobroma cacao]
18 Hb_000710_130 0.1018250391 - - metal ion binding protein, putative [Ricinus communis]
19 Hb_000201_060 0.1027082361 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X2 [Populus euphratica]
20 Hb_003747_080 0.1033971194 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]

Gene co-expression network

sample Hb_116679_010 Hb_116679_010 Hb_011689_090 Hb_011689_090 Hb_116679_010--Hb_011689_090 Hb_170597_010 Hb_170597_010 Hb_116679_010--Hb_170597_010 Hb_006275_080 Hb_006275_080 Hb_116679_010--Hb_006275_080 Hb_003607_040 Hb_003607_040 Hb_116679_010--Hb_003607_040 Hb_006452_080 Hb_006452_080 Hb_116679_010--Hb_006452_080 Hb_000027_010 Hb_000027_010 Hb_116679_010--Hb_000027_010 Hb_011689_090--Hb_006275_080 Hb_011689_090--Hb_170597_010 Hb_011689_090--Hb_006452_080 Hb_011689_090--Hb_003607_040 Hb_011689_090--Hb_000027_010 Hb_170597_010--Hb_006275_080 Hb_002232_340 Hb_002232_340 Hb_170597_010--Hb_002232_340 Hb_170597_010--Hb_006452_080 Hb_170597_010--Hb_003607_040 Hb_006275_080--Hb_000027_010 Hb_006275_080--Hb_006452_080 Hb_000710_130 Hb_000710_130 Hb_006275_080--Hb_000710_130 Hb_002215_020 Hb_002215_020 Hb_003607_040--Hb_002215_020 Hb_000012_340 Hb_000012_340 Hb_003607_040--Hb_000012_340 Hb_000358_070 Hb_000358_070 Hb_003607_040--Hb_000358_070 Hb_000816_170 Hb_000816_170 Hb_003607_040--Hb_000816_170 Hb_029508_050 Hb_029508_050 Hb_003607_040--Hb_029508_050 Hb_000527_090 Hb_000527_090 Hb_006452_080--Hb_000527_090 Hb_003090_250 Hb_003090_250 Hb_006452_080--Hb_003090_250 Hb_000201_060 Hb_000201_060 Hb_006452_080--Hb_000201_060 Hb_000027_010--Hb_000710_130 Hb_000186_090 Hb_000186_090 Hb_000027_010--Hb_000186_090 Hb_006052_080 Hb_006052_080 Hb_000027_010--Hb_006052_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 7.49531 3.33335 119.942 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.01468 1.78859

CAGE analysis