Hb_116685_010

Information

Type -
Description -
Location Contig116685: 1-922
Sequence    

Annotation

kegg
ID pop:POPTR_0013s02830g
description hypothetical protein
nr
ID XP_006375780.1
description hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FWB6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s02830g PE=4 SV=1
Gene Ontology
ID GO:0000166
description disease resistance gene nbs-lrr family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_116685_010 0.0 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
2 Hb_090459_010 0.1101961856 - - hypothetical protein POPTR_0005s042901g, partial [Populus trichocarpa]
3 Hb_125981_010 0.1525436071 - - hypothetical protein POPTR_0005s042901g, partial [Populus trichocarpa]
4 Hb_127819_010 0.1666234384 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
5 Hb_001565_120 0.168472877 - - PREDICTED: probable glutamate carboxypeptidase 2 isoform X1 [Jatropha curcas]
6 Hb_000960_010 0.1758715546 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
7 Hb_155642_010 0.1833277901 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
8 Hb_050495_010 0.2238151966 - - heat-shock protein, putative [Ricinus communis]
9 Hb_143863_010 0.2248191208 - - PREDICTED: uncharacterized protein LOC105113187 isoform X2 [Populus euphratica]
10 Hb_126506_010 0.2265645713 - - Disease resistance protein RPS5, putative [Ricinus communis]
11 Hb_162074_010 0.2337883735 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
12 Hb_136886_010 0.2339470532 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
13 Hb_011885_010 0.2459648392 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
14 Hb_002326_070 0.2526177075 - - ent-kaurene oxidase, chloroplastic [Jatropha curcas]
15 Hb_002205_100 0.2543772515 - - ATP binding protein, putative [Ricinus communis]
16 Hb_000813_080 0.2573495625 - - caspase, putative [Ricinus communis]
17 Hb_049958_010 0.2578366757 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
18 Hb_012760_180 0.2602826195 - - Basic-leucine zipper transcription factor family protein, putative [Theobroma cacao]
19 Hb_022880_020 0.2607810906 - - PREDICTED: uncharacterized protein LOC105631661 [Jatropha curcas]
20 Hb_003893_020 0.2618250224 transcription factor TF Family: MIKC PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_116685_010 Hb_116685_010 Hb_090459_010 Hb_090459_010 Hb_116685_010--Hb_090459_010 Hb_125981_010 Hb_125981_010 Hb_116685_010--Hb_125981_010 Hb_127819_010 Hb_127819_010 Hb_116685_010--Hb_127819_010 Hb_001565_120 Hb_001565_120 Hb_116685_010--Hb_001565_120 Hb_000960_010 Hb_000960_010 Hb_116685_010--Hb_000960_010 Hb_155642_010 Hb_155642_010 Hb_116685_010--Hb_155642_010 Hb_090459_010--Hb_000960_010 Hb_090459_010--Hb_001565_120 Hb_090459_010--Hb_127819_010 Hb_136886_010 Hb_136886_010 Hb_090459_010--Hb_136886_010 Hb_090459_010--Hb_155642_010 Hb_125981_010--Hb_155642_010 Hb_125981_010--Hb_127819_010 Hb_125981_010--Hb_090459_010 Hb_003893_020 Hb_003893_020 Hb_125981_010--Hb_003893_020 Hb_125981_010--Hb_000960_010 Hb_127819_010--Hb_000960_010 Hb_127819_010--Hb_136886_010 Hb_127819_010--Hb_001565_120 Hb_127819_010--Hb_155642_010 Hb_012760_180 Hb_012760_180 Hb_001565_120--Hb_012760_180 Hb_001565_120--Hb_000960_010 Hb_011885_010 Hb_011885_010 Hb_001565_120--Hb_011885_010 Hb_000960_010--Hb_136886_010 Hb_143863_010 Hb_143863_010 Hb_000960_010--Hb_143863_010 Hb_102100_010 Hb_102100_010 Hb_000960_010--Hb_102100_010 Hb_000015_180 Hb_000015_180 Hb_000960_010--Hb_000015_180 Hb_155642_010--Hb_000960_010 Hb_126506_010 Hb_126506_010 Hb_155642_010--Hb_126506_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.40672 50.5248 2.64485 6.93423 5.95239 13.0504
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.518396 0.40763 0.0924246 0.123616 0.102591

CAGE analysis