Hb_116701_010

Information

Type -
Description -
Location Contig116701: 2914-14753
Sequence    

Annotation

kegg
ID pop:POPTR_0005s19410g
description POPTRDRAFT_760608; hypothetical protein
nr
ID XP_002306519.1
description hypothetical protein POPTR_0005s19410g [Populus trichocarpa]
swissprot
ID O04514
description Oligopeptide transporter 2 OS=Arabidopsis thaliana GN=OPT2 PE=2 SV=2
trembl
ID B9H6S1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s19410g PE=4 SV=1
Gene Ontology
ID GO:0005886
description oligopeptide transporter 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05120: 3240-3815 , PASA_asmbl_05121: 3817-5501 , PASA_asmbl_05122: 5507-6783
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_116701_010 0.0 - - hypothetical protein POPTR_0005s19410g [Populus trichocarpa]
2 Hb_000130_350 0.0756108222 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
3 Hb_158092_050 0.0898675865 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10 [Jatropha curcas]
4 Hb_000428_040 0.1062510811 - - PREDICTED: protein trichome birefringence-like 31 [Populus euphratica]
5 Hb_008762_010 0.1096698272 - - dopamine beta-monooxygenase, putative [Ricinus communis]
6 Hb_000173_240 0.1128190086 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001366_110 0.1205787457 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000347_060 0.1259333107 - - PREDICTED: uncharacterized protein LOC105631356 [Jatropha curcas]
9 Hb_001189_080 0.1301185651 - - conserved hypothetical protein [Ricinus communis]
10 Hb_031284_060 0.1309185449 - - PREDICTED: cellulose synthase A catalytic subunit 7 [UDP-forming] [Jatropha curcas]
11 Hb_008461_060 0.1328861879 - - hypothetical protein JCGZ_17379 [Jatropha curcas]
12 Hb_000173_140 0.1341403364 - - EF-hand calcium-binding domain-containing protein 4A [Theobroma cacao]
13 Hb_002078_180 0.1365878255 - - PREDICTED: 65-kDa microtubule-associated protein 8 [Jatropha curcas]
14 Hb_000236_230 0.1367350078 - - PREDICTED: E3 ubiquitin-protein ligase At4g11680 isoform X2 [Jatropha curcas]
15 Hb_004225_120 0.1395313759 - - PREDICTED: uncharacterized protein LOC105628059 [Jatropha curcas]
16 Hb_005686_040 0.1400404134 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000964_080 0.1400521297 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Jatropha curcas]
18 Hb_000193_320 0.140295727 - - conserved hypothetical protein [Ricinus communis]
19 Hb_050160_010 0.1411046166 - - hypothetical protein JCGZ_24934 [Jatropha curcas]
20 Hb_001051_060 0.1418467019 - - UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_116701_010 Hb_116701_010 Hb_000130_350 Hb_000130_350 Hb_116701_010--Hb_000130_350 Hb_158092_050 Hb_158092_050 Hb_116701_010--Hb_158092_050 Hb_000428_040 Hb_000428_040 Hb_116701_010--Hb_000428_040 Hb_008762_010 Hb_008762_010 Hb_116701_010--Hb_008762_010 Hb_000173_240 Hb_000173_240 Hb_116701_010--Hb_000173_240 Hb_001366_110 Hb_001366_110 Hb_116701_010--Hb_001366_110 Hb_000130_350--Hb_158092_050 Hb_031284_060 Hb_031284_060 Hb_000130_350--Hb_031284_060 Hb_000130_350--Hb_000173_240 Hb_000130_350--Hb_008762_010 Hb_000130_350--Hb_000428_040 Hb_158092_050--Hb_000173_240 Hb_008461_060 Hb_008461_060 Hb_158092_050--Hb_008461_060 Hb_158092_050--Hb_031284_060 Hb_000193_320 Hb_000193_320 Hb_158092_050--Hb_000193_320 Hb_004657_070 Hb_004657_070 Hb_000428_040--Hb_004657_070 Hb_000236_230 Hb_000236_230 Hb_000428_040--Hb_000236_230 Hb_000428_040--Hb_008762_010 Hb_000173_140 Hb_000173_140 Hb_000428_040--Hb_000173_140 Hb_008762_010--Hb_031284_060 Hb_001189_080 Hb_001189_080 Hb_008762_010--Hb_001189_080 Hb_008762_010--Hb_158092_050 Hb_005523_030 Hb_005523_030 Hb_008762_010--Hb_005523_030 Hb_002078_180 Hb_002078_180 Hb_000173_240--Hb_002078_180 Hb_000173_240--Hb_000193_320 Hb_009476_080 Hb_009476_080 Hb_000173_240--Hb_009476_080 Hb_002835_360 Hb_002835_360 Hb_000173_240--Hb_002835_360 Hb_001935_060 Hb_001935_060 Hb_000173_240--Hb_001935_060 Hb_005686_040 Hb_005686_040 Hb_000173_240--Hb_005686_040 Hb_001366_110--Hb_158092_050 Hb_001366_110--Hb_000236_230 Hb_001366_110--Hb_000130_350 Hb_000108_180 Hb_000108_180 Hb_001366_110--Hb_000108_180 Hb_001541_060 Hb_001541_060 Hb_001366_110--Hb_001541_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0826352 0.153743 0.586338 9.17702 0.142222 0.0933242
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0474792 0.0822039 0.201231 0.0414175 5.30925

CAGE analysis